View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8932_low_4 (Length: 730)

Name: NF8932_low_4
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8932_low_4
NF8932_low_4
[»] chr5 (4 HSPs)
chr5 (371-602)||(2523422-2523654)
chr5 (1-239)||(2523806-2524041)
chr5 (617-719)||(2523331-2523433)
chr5 (161-241)||(34903357-34903438)
[»] chr4 (5 HSPs)
chr4 (158-240)||(50620620-50620703)
chr4 (158-236)||(44369018-44369099)
chr4 (158-241)||(37175752-37175836)
chr4 (158-236)||(26009697-26009776)
chr4 (161-241)||(39292315-39292396)
[»] scaffold1137 (1 HSPs)
scaffold1137 (161-241)||(833-914)
[»] chr8 (2 HSPs)
chr8 (161-233)||(15808689-15808762)
chr8 (168-241)||(3036502-3036576)
[»] chr6 (1 HSPs)
chr6 (158-241)||(6420246-6420330)
[»] chr7 (1 HSPs)
chr7 (190-240)||(42386190-42386240)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 5e-92; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 371 - 602
Target Start/End: Complemental strand, 2523654 - 2523422
Alignment:
Q  371 cacaatatgtttgtcacacatgtcatgacacagaataagacccaaatcagcatgcaaggatgggaaaggaaagctgttggcatttttccactctactcta 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2523654 cacaatatgtttgtcacacatgtcatgacacagaataagacccaaatcagcatgcaaggatgggaaaggaaagctgttggcatttttccactctactcta 2523555  T
Q  471 gagtgtgaaactccatttcaactctcctcagtcaaagacac-nnnnnnncattctctttttcatccatccagaaagaaaggtgacatttaacatggaaag 569  Q
     ||||||||||||||||||||||||||||||||||| ||||        | |||||||||||||||||||||||||||||||||||||||  |||||||     
T  2523554 cagtgtgaaactccatttcaactctcctcagtcaaatacacttttttttctttctctttttcatccatccagaaagaaaggtgacatttagtatggaaat 2523455  T
Q  570 ggtaattgtttcccactataagaaagttgattt 602  Q
    |||||||||||||||  ||||||||||||||||    
T  2523454 ggtaattgtttcccaacataagaaagttgattt 2523422  T

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Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2524041 - 2523806
Alignment:
Q  1 gtctccggcacaaaggtatcagtgcactcaaattagttattaaaaa-taaacaacacaacttcaccgattccaatatctgcataaagagatatatttata 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2524041 gtctccggcacaaaggtatcagtgcactcaaattaattattaaaaaataaacaacacaacttcaccgattccaacatctgcataaagagatatatttata 2523942  T
Q  100 agggttttccaaacgaatgttcttaagacagcggttaggttaaggaatnnnnnnnnggaataattgtgaaattttatatataaaaagttg-tttttacta 198  Q
    ||| |||| | ||| |||| |||||||||||      |||||| ||||        | |||||||||||||||| || |||||||||||| |||||||||    
T  2523941 aggatttttctaaccaatgctcttaagacag-----tggttaaagaatcaaaaaaggaaataattgtgaaatttcatgtataaaaagttgctttttacta 2523847  T
Q  199 tttcaataatttgaatgcacaatttttaagataaagttact 239  Q
     |||||||| ||||||||| ||||| |||||||||||||||    
T  2523846 attcaataagttgaatgcataatttctaagataaagttact 2523806  T

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Target: chr5; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 617 - 719
Target Start/End: Complemental strand, 2523433 - 2523331
Alignment:
Q  617 gaaagttgatttattaccactagattaagcaggtacattgatcatactataggttgtccatactatatattttttcactttgtcttcaacctcatcacca 716  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  2523433 gaaagttgatttattaccactagattaagcaggtacattgatcatactataggttgtctatactatatattttttcactttgtcttcaacctcaccacca 2523334  T
Q  717 cca 719  Q
    |||    
T  2523333 cca 2523331  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 34903357 - 34903438
Alignment:
Q  161 aattgtgaaattttatatataaaaagttg-tttttactatttcaataatttgaatgcacaatttttaagataaagttactac 241  Q
    |||| |||||||| || || ||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  34903357 aattctgaaatttcatgtagaaaaaattgctttttactatttcaataagttgaatgcacaattttcaagataaagttactac 34903438  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 50620703 - 50620620
Alignment:
Q  158 aataattgtgaaattttatatataaaaagttg-tttttactatttcaataatttgaatgcacaatttttaagataaagttacta 240  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||  |||||||| ||||||    
T  50620703 aataattatgaaattttatatagaaaaagttgctttttactatttcaataagttgaatgcacaatttccaagataaatttacta 50620620  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 44369099 - 44369018
Alignment:
Q  158 aataattgtgaaattttatatataaaaagttgtttttacta---tttcaataatttgaatgcacaatttttaagataaagtt 236  Q
    ||||||||| |||||||||||| ||||  ||||||||  ||   ||||||||| |||||| |||||||||||||||||||||    
T  44369099 aataattgttaaattttatataaaaaatattgttttttttaatctttcaataaattgaatacacaatttttaagataaagtt 44369018  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 37175752 - 37175836
Alignment:
Q  158 aataattgtgaaattttatatataaaaagttg-tttttactatttcaataatttgaatgcacaatttttaagataaagttactac 241  Q
    |||| ||||||||||||||||| |||||  || |||||| | ||||||||| ||||||||| |||||  ||||||||||| ||||    
T  37175752 aatagttgtgaaattttatatagaaaaatgtgctttttaatctttcaataagttgaatgcataatttccaagataaagttgctac 37175836  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 26009697 - 26009776
Alignment:
Q  158 aataattgtgaaattttatatataaaaagttg-tttttactatttcaataatttgaatgcacaatttttaagataaagtt 236  Q
    ||||||||  || |||||| |||||||||||| |||||| |||||||||| ||||||| ||||| ||  |||||||||||    
T  26009697 aataattgctaacttttatgtataaaaagttgctttttaatatttcaatattttgaatacacaaattccaagataaagtt 26009776  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 39292396 - 39292315
Alignment:
Q  161 aattgtgaaattttatatataaaaagttg-tttttactatttcaataatttgaatgcacaatttttaagataaagttactac 241  Q
    |||| |||||||| || || ||||||||| |||||| | ||||||||| ||||||||| |||||  ||||||||||| ||||    
T  39292396 aattatgaaatttaatgtagaaaaagttgctttttaatctttcaataagttgaatgcataatttccaagataaagttgctac 39292315  T

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Target: scaffold1137 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 914 - 833
Alignment:
Q  161 aattgtgaaattttatatataaaaagttgt-ttttactatttcaataatttgaatgcacaatttttaagataaagttactac 241  Q
    ||||||||||||| || || |||||||||| ||||| | ||||||||| |||||||||||||||  |||| |||||||||||    
T  914 aattgtgaaatttcatgtagaaaaagttgtgttttaatctttcaataagttgaatgcacaatttccaagacaaagttactac 833  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 15808689 - 15808762
Alignment:
Q  161 aattgtgaaattttatatataaaaagttg-tttttactatttcaataatttgaatgcacaatttttaagataaa 233  Q
    |||||| ||||||||| |||||||||||  |||||| | ||||||||| || ||| ||||||||||||||||||    
T  15808689 aattgttaaattttatgtataaaaagttcctttttaatctttcaataagttaaatacacaatttttaagataaa 15808762  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 3036502 - 3036576
Alignment:
Q  168 aaattttatatataaaaagttgttttt-actatttcaataatttgaatgcacaatttttaagataaagttactac 241  Q
    ||||||||| |  |||||||||||||| | | ||| ||||| |||||| ||||||||||||||||||||| ||||    
T  3036502 aaattttatgtgaaaaaagttgttttttaatcttttaataagttgaatacacaatttttaagataaagttgctac 3036576  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 6420246 - 6420330
Alignment:
Q  158 aataattgtgaaattttatatataaaaagttg-tttttactatttcaataatttgaatgcacaatttttaagataaagttactac 241  Q
    |||||||||||||||| |  || |||| |||| ||||||||||||||| || ||||||||||| |||  || |||||||||||||    
T  6420246 aataattgtgaaatttcaagtagaaaatgttgctttttactatttcaaaaagttgaatgcacattttccaaaataaagttactac 6420330  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 42386240 - 42386190
Alignment:
Q  190 tttttactatttcaataatttgaatgcacaatttttaagataaagttacta 240  Q
    |||||| | ||||||||| || |||||||||||||||||||||| ||||||    
T  42386240 tttttaatctttcaataaattaaatgcacaatttttaagataaaattacta 42386190  T

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