View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8932_low_6 (Length: 615)
Name: NF8932_low_6
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8932_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 178 - 597
Target Start/End: Complemental strand, 28182556 - 28182137
Alignment:
| Q |
178 |
cctgttgaatttcaaggcttagatgtttcttcaacaaaaacatttgaagcgttttttctaccagaaactgctctagtagcatctaacaagagcttcgaga |
277 |
Q |
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| T |
28182556 |
cctgttgaatttcaaggcttagatgtttcttcaacaaaaacatttgaagcgttttttctaccagaaactgctctagtagcatctaacaagagcttcgaga |
28182457 |
T |
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| Q |
278 |
cgttaattgcagtgttaaaggtgaaggcaaagccgtataatgcggtggtaaatcggccgccggtggatcttgtcacggtggtggatataggttgttcaat |
377 |
Q |
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| T |
28182456 |
cgttaattgcagtgttaaaggtgaaggcaaagccgtataatgcggtggtaaatcggccgccggtggatcttgtcacggtggtggatataggttgttcaat |
28182357 |
T |
|
| Q |
378 |
ttccggtgaagatattttgaaactcaaacgttcaatgcaagttgtaatctctgcgctcaattcctccgatcgtctctccgtcgttgtattctccagtgga |
477 |
Q |
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| T |
28182356 |
ttccggtgaagatattttgaaactcaaacgttcaatgcaagttgtaatctctgcgctcaattcctccgatcgtctctccgtcgttgtattctccagtgga |
28182257 |
T |
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| Q |
478 |
tcaaaacggttgtttcctttgcggagaatgaccggccgcggtcgcagatcggtgcgtcggagcatagaagcgatcggtgttgatgagatgaatggtgacg |
577 |
Q |
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| T |
28182256 |
tcaaaacggttgtttcctttgcggagaatgaccggccgcggtcgcagatcggtgcgtcggagcatagaagcgatcggtgttgatgagatgaatggtgacg |
28182157 |
T |
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| Q |
578 |
gagttccggcgaggaaggag |
597 |
Q |
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| T |
28182156 |
gatttccggcgaggaaggag |
28182137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 28182715 - 28182608
Alignment:
| Q |
19 |
aaaaccgcagagaacgccaaaacaacgacgtcgtcgaagcttccaaactacaacgacgacgagccactcctgtcctctgcctccgtttctcgcttcagca |
118 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28182715 |
aaaactgcagagaacgccaaaacaacgacgttgtcgaagcttccaaactacaacgacgacgagccactcctgtcctctgcctccgtttctcgcttcagca |
28182616 |
T |
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| Q |
119 |
ccataccc |
126 |
Q |
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| T |
28182615 |
ccataccc |
28182608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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