View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8932_low_8 (Length: 478)

Name: NF8932_low_8
Description: NF8932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8932_low_8
NF8932_low_8
[»] chr4 (3 HSPs)
chr4 (18-471)||(52350450-52350904)
chr4 (233-372)||(20303938-20304076)
chr4 (244-370)||(20298067-20298193)
[»] chr5 (11 HSPs)
chr5 (82-372)||(30473961-30474255)
chr5 (233-370)||(30481989-30482126)
chr5 (266-370)||(30398671-30398775)
chr5 (233-368)||(30434481-30434616)
chr5 (233-369)||(30339834-30339970)
chr5 (234-372)||(30429526-30429664)
chr5 (233-370)||(30243681-30243818)
chr5 (233-368)||(29870845-29870980)
chr5 (234-372)||(30523010-30523148)
chr5 (234-372)||(30563350-30563488)
chr5 (233-293)||(30395902-30395962)
[»] chr7 (1 HSPs)
chr7 (244-370)||(26705920-26706046)


Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 52350904 - 52350450
Alignment:
Q  18 aaaatgacatcctttccagaaggcatgttgagaaacttgacttgtctgcaaactcttatactaactaatttcccgaaattaaaggaactaccaaatgaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350904 aaaatgacatcctttccagaaggcatgttgagaaacttgacttgtctgcaaactcttatactaactaatttcccgaaattaaaggaactaccaaatgaac 52350805  T
Q  118 ccttaagcctggctttagaacgtctgcaa-tttctcgttgtggtgaccttgagtcttcaccggagcaaatgttggaaggtcttcaatcccttcaaacaat 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52350804 ccttaagcctggctttagaacgtctgcaaatttctcgttgtggtgaccttgagtcttcaccggagcaaatgttggaaggtcttcaatcccttcgaacaat 52350705  T
Q  217 tgaaatatctagttgtggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350704 tgaaatatctagttgtggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggag 52350605  T
Q  317 cgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattccaaaatttggtattgattagaataaaaaagcagacatgtttgaagaacatt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52350604 cgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattccaaaatttggtattgaatagaataaaaaagcagacatgtttgaagaacatt 52350505  T
Q  417 gagtcaacttgtttattcttatatacttccaccaccactgttattacctctgctt 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52350504 gagtcaacttgtttattcttatatacttccaccaccactgttattacctttgctt 52350450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 372
Target Start/End: Original strand, 20303938 - 20304076
Alignment:
Q  233 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 332  Q
    |||||||||| |||||| ||| ||||||||   |||||||||||||||||  ||| ||||| ||| ||||||||||||||||| || || ||    ||||    
T  20303938 ggattgagatgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaa 20304037  T
Q  333 caggggaggactatgacaaaatagcgcacattccaaaatt 372  Q
    |||| ||||| |  ||||| |||||||| |||||||||||    
T  20304038 caggcgagga-ttggacaagatagcgcatattccaaaatt 20304076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 370
Target Start/End: Original strand, 20298067 - 20298193
Alignment:
Q  244 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 343  Q
    |||||||||| | |||| | | |||||||| |||||| | ||||||||  || ||||||| |||||||||   ||||| || || ||||||||||||||     
T  20298067 cttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacattaaagttacgatgcaaagagggaacaggggaggat 20298166  T
Q  344 tatgacaaaatagcgcacattccaaaa 370  Q
    |  ||||| ||||| || |||||||||    
T  20298167 tgggacaagatagctcatattccaaaa 20298193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 82 - 372
Target Start/End: Complemental strand, 30474255 - 30473961
Alignment:
Q  82 ctaatttcccgaaattaaaggaactaccaaatgaacccttaagcctggctttagaacgtctgca-atttctcgttgtggtgaccttgagtcttcaccgga 180  Q
    |||||||||| ||||| ||| ||||||||||||||||||| | ||| |  || ||  |||||   || |||  ||||||||| |||||||||  ||||||    
T  30474255 ctaatttcccaaaattgaagaaactaccaaatgaacccttcaacctagtgttggagtgtctgagtatctcttcttgtggtgagcttgagtctataccgga 30474156  T
Q  181 gcaaatgttggaaggtcttcaatcccttcaaacaattgaaatatctagttgtgga---ttgagatccttgccagaatgtattcgaaatctcacttcactt 277  Q
     ||||  | ||||||||||| ||| |||| ||| ||||| ||   |  |||||||   ||||||||||| || |||| ||||| | | ||||||||||||    
T  30474155 acaaacatgggaaggtcttcgatctcttcgaactattgatattggttattgtggaggattgagatcctttcccgaatctattcaacacctcacttcactt 30474056  T
Q  278 gaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattccaaaatt 372  Q
    ||| |  |||  ||| | | |||||||||||||||||||||||  ||  ||||||| || |||||||  ||||| ||||||||||||||||||||    
T  30474055 gagtttttgaaaattcgaggttgcccaacattaaaggagcgattgaagaaaggaaccggtgaggactgggacaagatagcgcacattccaaaatt 30473961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 370
Target Start/End: Complemental strand, 30482126 - 30481989
Alignment:
Q  233 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 332  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||||| ||||| ||||| || |||||||||||| |||| ||||| || || ||||    
T  30482126 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaatgcccaacattagaggaacgatgcaaagagggaa 30482027  T
Q  333 caggggaggactatgacaaaatagcgcacattccaaaa 370  Q
    || ||||||| |  ||||| ||||| || |||||||||    
T  30482026 catgggaggattgggacaagatagctcatattccaaaa 30481989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 30398775 - 30398671
Alignment:
Q  266 ctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattc 365  Q
    |||||||| |||||||| ||||| ||   ||||||||||||||||||||| ||||| || || |||||||||||||| |  ||||| ||||| || ||||    
T  30398775 ctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattc 30398676  T
Q  366 caaaa 370  Q
    |||||    
T  30398675 caaaa 30398671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 368
Target Start/End: Complemental strand, 30434616 - 30434481
Alignment:
Q  233 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 332  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||| ||||   ||||||||||||||||||||| ||||| || || ||||    
T  30434616 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaa 30434517  T
Q  333 caggggaggactatgacaaaatagcgcacattccaa 368  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  30434516 caggggaggattgggacaagatagctcatattccaa 30434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 369
Target Start/End: Original strand, 30339834 - 30339970
Alignment:
Q  233 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 332  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||||||||   | |||||||||||||| |||| ||||| || || ||||    
T  30339834 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaa 30339933  T
Q  333 caggggaggactatgacaaaatagcgcacattccaaa 369  Q
    |||||||||| |  ||||| ||||| || ||||||||    
T  30339934 caggggaggattgggacaagatagctcatattccaaa 30339970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 372
Target Start/End: Complemental strand, 30429664 - 30429526
Alignment:
Q  234 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 333  Q
    ||||||||| |||||||||| ||||||   | ||||| ||||||||||| ||| | |||| || ||||||| |  ||| |||||||||||| || ||||     
T  30429664 gattgagatgcttgccagaaggtattctgcacctcacatcacttgaggttctggcaatttatggttgcccagctgtaacggagcgatgtaaggagggaat 30429565  T
Q  334 aggggaggactatgacaaaatagcgcacattccaaaatt 372  Q
    ||| |||||||  ||||| ||||  |||||||| |||||    
T  30429564 aggagaggactgggacaagatagaacacattcctaaatt 30429526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 370
Target Start/End: Original strand, 30243681 - 30243818
Alignment:
Q  233 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 332  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| ||||||||  ||| ||||| | | || ||||||||| |||| ||||| || || ||||    
T  30243681 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaa 30243780  T
Q  333 caggggaggactatgacaaaatagcgcacattccaaaa 370  Q
    |||||||||| |  ||||| ||||| || |||||||||    
T  30243781 caggggaggattgggacaagatagctcatattccaaaa 30243818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 368
Target Start/End: Complemental strand, 29870980 - 29870845
Alignment:
Q  233 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 332  Q
    |||||| ||| |||||| ||  |||||||| | ||||||||||||||| | ||| | |||   | ||||||||||||| |||| ||||| || || ||||    
T  29870980 ggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagagggaa 29870881  T
Q  333 caggggaggactatgacaaaatagcgcacattccaa 368  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  29870880 caggggaggattgggacaagatagctcatattccaa 29870845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 372
Target Start/End: Original strand, 30523010 - 30523148
Alignment:
Q  234 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 333  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30523010 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30523109  T
Q  334 aggggaggactatgacaaaatagcgcacattccaaaatt 372  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30523110 aggagaggactgggacatgatagaacacattccaaaatt 30523148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 372
Target Start/End: Original strand, 30563350 - 30563488
Alignment:
Q  234 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 333  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30563350 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30563449  T
Q  334 aggggaggactatgacaaaatagcgcacattccaaaatt 372  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30563450 aggagaggactgggacatgatagaacacattccaaaatt 30563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 30395962 - 30395902
Alignment:
Q  233 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactattt 293  Q
    ||||||| |||||||| |||| |||||| |   ||||||||||||||||| ||||||||||    
T  30395962 ggattgaaatccttgcaagaaggtattccacgcctcacttcacttgaggttctgactattt 30395902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 370
Target Start/End: Complemental strand, 26706046 - 26705920
Alignment:
Q  244 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 343  Q
    |||||||||  |||||||| | |||||||| |||||| | ||||  |||||   ||||||||||||| |||| ||||| || || ||||||||||||||     
T  26706046 cttgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggat 26705947  T
Q  344 tatgacaaaatagcgcacattccaaaa 370  Q
    |  ||||| ||||| || |||||||||    
T  26705946 tgggacaagatagctcatattccaaaa 26705920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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