View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8933_high_1 (Length: 790)

Name: NF8933_high_1
Description: NF8933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8933_high_1
NF8933_high_1
[»] chr6 (5 HSPs)
chr6 (90-726)||(4281146-4281772)
chr6 (35-94)||(4282395-4282453)
chr6 (736-772)||(11233889-11233925)
chr6 (736-770)||(8671467-8671501)
chr6 (390-435)||(17998678-17998723)
[»] chr3 (9 HSPs)
chr3 (236-726)||(17594765-17595256)
chr3 (90-233)||(19807219-19807371)
chr3 (428-533)||(26902954-26903054)
chr3 (666-723)||(26902895-26902952)
chr3 (92-126)||(12208029-12208063)
chr3 (35-94)||(12208669-12208727)
chr3 (35-94)||(19807976-19808034)
chr3 (420-459)||(12208097-12208136)
chr3 (736-770)||(18558884-18558918)
[»] chr8 (11 HSPs)
chr8 (117-531)||(31710142-31710557)
chr8 (90-321)||(14674485-14674717)
chr8 (90-233)||(18974332-18974466)
chr8 (228-322)||(20133873-20133967)
chr8 (736-770)||(3301781-3301815)
chr8 (35-94)||(31709404-31709462)
chr8 (736-772)||(25556803-25556839)
chr8 (90-126)||(31710091-31710127)
chr8 (58-94)||(14673771-14673808)
chr8 (35-94)||(18973669-18973727)
chr8 (390-435)||(36283670-36283715)
[»] scaffold0130 (1 HSPs)
scaffold0130 (355-726)||(17004-17373)
[»] chr4 (3 HSPs)
chr4 (390-726)||(12325893-12326224)
chr4 (173-322)||(12325739-12325891)
chr4 (90-122)||(12325692-12325724)
[»] chr2 (1 HSPs)
chr2 (160-418)||(8165820-8166086)
[»] chr5 (3 HSPs)
chr5 (183-451)||(11203450-11203709)
chr5 (736-772)||(40934906-40934942)
chr5 (736-770)||(38838760-38838794)
[»] chr1 (2 HSPs)
chr1 (464-609)||(20196581-20196726)
chr1 (736-772)||(24279125-24279161)
[»] chr7 (5 HSPs)
chr7 (90-233)||(5331406-5331542)
chr7 (228-322)||(44358104-44358198)
chr7 (35-94)||(5332147-5332205)
chr7 (736-772)||(360140-360176)
chr7 (390-435)||(11098606-11098651)
[»] scaffold0076 (1 HSPs)
scaffold0076 (173-322)||(47845-47997)
[»] scaffold0023 (1 HSPs)
scaffold0023 (736-772)||(148460-148496)
[»] scaffold0010 (1 HSPs)
scaffold0010 (390-429)||(128684-128723)


Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 90 - 726
Target Start/End: Complemental strand, 4281772 - 4281146
Alignment:
Q  90 ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagttttttggcaataatctagtatgataatggatattttg 189  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4281772 ttcatatctgcattggtttttcggtagatatatatatgcactgtgctgcaattggcttatagttttttggcaataatctagtatgataatggatattttg 4281673  T
Q  190 gagacaataggttggaccttcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatga 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4281672 gagacaataggttggaccttcatccctgatttcattaatactacagcaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaacga 4281573  T
Q  290 actgaatttctcatctccatcagcccagttatcggtaaatgaagtggagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggt 389  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4281572 actcaatttctcatctccatcagcccggttatcggtaaatgaagtgtagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagt 4281473  T
Q  390 ggaggtcaattcatcaccatcatagtcatccttattaacaggcggatatcatatacaatcatatcacgagaaaggaacccggataaatgctcgaagcagc 489  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||    
T  4281472 ggaggtcaattcgtcaccatcatagtcatccttattaacaggtggatatcatatacaatcatatcacgagaaaggagctcggataaatgctcaaagcagc 4281373  T
Q  490 aaggaccgaggcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaa 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4281372 aaggaccgaggcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaa 4281273  T
Q  590 agtaattagtaacagctcaggacttcataatttgtctttaatcgatattatataccttccaactatttttctgacgcatatgtgcatattaaagaaaacc 689  Q
    |||||||||||||| ||||||||||||||||||||||||||          ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  4281272 agtaattagtaacaactcaggacttcataatttgtctttaa----------atatcttccaactatttttctggcgcatatgtgcatattaaagaaaacc 4281183  T
Q  690 atccaggttctatatttcctcaattaattcatagcac 726  Q
    |||||||||||||||||||||||||||||||||||||    
T  4281182 atccaggttctatatttcctcaattaattcatagcac 4281146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 4282453 - 4282395
Alignment:
Q  35 taaatatcagtaatactgtgccacaggttgttactttctaactttgtt-ctctccgttcat 94  Q
    |||||||||||||||| ||| ||  ||||||||||||||||||||||| ||||||||||||    
T  4282453 taaatatcagtaataccgtgtca--ggttgttactttctaactttgttactctccgttcat 4282395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 772
Target Start/End: Original strand, 11233889 - 11233925
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaatt 772  Q
    |||||||||||||||||||||||||||| ||||||||    
T  11233889 tacatcatatgtggataataagtcttatggtcaaatt 11233925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 736 - 770
Target Start/End: Original strand, 8671467 - 8671501
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaa 770  Q
    ||||||||||| |||||||||||||||||||||||    
T  8671467 tacatcatatgcggataataagtcttatagtcaaa 8671501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 17998723 - 17998678
Alignment:
Q  390 ggaggtcaattcatcaccatcatagtcatccttattaacaggcgga 435  Q
    |||| |||| ||||||||||||||||||| ||||| ||||||||||    
T  17998723 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 17998678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 236 - 726
Target Start/End: Original strand, 17594765 - 17595256
Alignment:
Q  236 caagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatcggtaaatgaagtg 335  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||||||    
T  17594765 caagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatcggtaaatgaagtg 17594864  T
Q  336 gagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattcatcaccatcatagtcatccttattaacaggcgga 435  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| | ||||||||||    
T  17594865 gaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattcgtcaccatcatagtcatccttgtgaacaggcgga 17594964  T
Q  436 tatcatatacaatcatatcacgagaaaggaacccggataaatgctcgaagcagcaaggaccgaggcggcatcattcaaaagaaaattaacgacaaggttc 535  Q
    |||||||||||||||| |||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17594965 tatcatatacaatcatgtcacgagaaaggaacctgaataaatgctcaaagcagcaaggaccgaagcggcatcattcaaaagaaaattaacgacaaggttc 17595064  T
Q  536 tatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaaagtaattagtaacagctcaggacttcataatttgtctttaatcgat 635  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||    
T  17595065 tatattcttgatcttttatgtatagggctgatatatgt-ttcaaatacttcaaaagtaattaatgacaactcaggacttcataatttgtctttaatcaat 17595163  T
Q  636 at--tatataccttccaactatttttctgacgcatatgtgcatattaaagaaaaccatccaggttctatatttcctcaattaattcatagcac 726  Q
    ||  |||||| ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17595164 attatatatatcttccaactatttttgtggcgcataggtgcatattaaagaaaaccatccaggttctatatttcttcaattaattcatagcac 17595256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 19807371 - 19807219
Alignment:
Q  90 ttcatatctgcattggtttttcggtggatatatatatgcactgtgct--------gcaattggcttatagtttttt-ggcaataatctagtatgataatg 180  Q
    ||||||| ||||||||||||||||||||||||||||||||||  | |        ||| | ||||||||||||||| || ||||||||||||||||||||    
T  19807371 ttcatatatgcattggtttttcggtggatatatatatgcactaggatatatatatgcactaggcttatagtttttttggaaataatctagtatgataatg 19807272  T
Q  181 gatattttggagacaataggttggaccttcatccctgatttcattaatactac 233  Q
    |||||||||||||||||||||||||| ||||||| |||||  |||| ||||||    
T  19807271 gatattttggagacaataggttggactttcatccttgattctattactactac 19807219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 428 - 533
Target Start/End: Complemental strand, 26903054 - 26902954
Alignment:
Q  428 caggcggatatcatatacaatcatatcacgagaaaggaacccggataaatgctcgaagcagcaaggaccgaggcggcatcattcaaaagaaaattaacga 527  Q
    ||||||||||||||||||||||||     ||| || |||||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||| ||    
T  26903054 caggcggatatcatatacaatcat-----gaggaatgaacccggataaatgctcaaagcagcgaggaccgaagcggcaccattcaaaagaaaattaatga 26902960  T
Q  528 caaggt 533  Q
    ||||||    
T  26902959 caaggt 26902954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 666 - 723
Target Start/End: Complemental strand, 26902952 - 26902895
Alignment:
Q  666 catatgtgcatattaaagaaaaccatccaggttctatatttcctcaattaattcatag 723  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  26902952 catatatgcatattaaagaaaaccatccagattctatatttcctcaattaatacatag 26902895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 12208029 - 12208063
Alignment:
Q  92 catatctgcattggtttttcggtggatatatatat 126  Q
    |||||||||||||||||||||||||||||||||||    
T  12208029 catatctgcattggtttttcggtggatatatatat 12208063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 12208727 - 12208669
Alignment:
Q  35 taaatatcagtaatactgtgccacaggttgttactttctaactttgtt-ctctccgttcat 94  Q
    |||||||||||||||| ||| ||  ||||||||||||||||||||||| ||||||||||||    
T  12208727 taaatatcagtaataccgtgtca--ggttgttactttctaactttgttactctccgttcat 12208669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 19808034 - 19807976
Alignment:
Q  35 taaatatcagtaatactgtgccacaggttgttactttctaactttgtt-ctctccgttcat 94  Q
    |||||||||||||||| ||| ||  ||||||||||||||||||||||| ||||||||||||    
T  19808034 taaatatcagtaataccgtgtca--ggttgttactttctaactttgttactctccgttcat 19807976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 459
Target Start/End: Original strand, 12208097 - 12208136
Alignment:
Q  420 cttattaacaggcggatatcatatacaatcatatcacgag 459  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  12208097 cttatgaacaggcggatatcatatacaatcatgtcacgag 12208136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 736 - 770
Target Start/End: Original strand, 18558884 - 18558918
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaa 770  Q
    ||||||| |||||||||||||||||||||||||||    
T  18558884 tacatcacatgtggataataagtcttatagtcaaa 18558918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 117 - 531
Target Start/End: Original strand, 31710142 - 31710557
Alignment:
Q  117 atatatatatgcactgtgctgcaattggcttatagtttt-ttggcaataatctagtatgataatggatattttggagacaataggttggaccttcatccc 215  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31710142 atatatatatgcactgtgctgcaattggcttatagtttttttggcaataatctagtatgataattgatattttggagacaataggttggaccttcatccc 31710241  T
Q  216 tgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagccc 315  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |    
T  31710242 tgatttcattaatactacagcaagggtgttgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcatctccatcagctc 31710341  T
Q  316 agttatcggtaaatgaagtggagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattcatcaccatcatagt 415  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  31710342 ggttatcggtaaatgaagtggaatgtgtggctttctctcaacgccaacgacgtcacgaagatccgaccgacagtggagctcaattcgtcaccatcatagt 31710441  T
Q  416 catccttattaacaggcggatatcatatacaatcatatcacgagaaaggaacccggataaatgctcgaagcagcaaggaccgaggcggcatcattcaaaa 515  Q
    ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  31710442 catccttatgaacaggcggatatcatatacaatcatgtcacaagaaaggaacccggataaatgctcaaagcagcaaggatcgaagcggcatcattcaaaa 31710541  T
Q  516 gaaaattaacgacaag 531  Q
    ||||||||||||||||    
T  31710542 gaaaattaacgacaag 31710557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 90 - 321
Target Start/End: Original strand, 14674485 - 14674717
Alignment:
Q  90 ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagtttt-ttggcaataatctagtatgataatggatatttt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||    
T  14674485 ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagtttttttggcaatagtctagtatgataattgatatttt 14674584  T
Q  189 ggagacaataggttggaccttcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatg 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||      
T  14674585 ggagacaataggttggacattcatccctgatttcattaatactacagcaaggttgttgtacttcctaagtaattttcagggcctcaagattcaacaaaca 14674684  T
Q  289 aactgaatttctcatctccatcagcccagttat 321  Q
    |||| ||||||||| || ||||| ||| |||||    
T  14674685 aactcaatttctcacctacatcaacccggttat 14674717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 18974332 - 18974466
Alignment:
Q  90 ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagtttttt-ggcaataatctagtatgataatggatatttt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||| || ||||||||||||||||||||||||||||    
T  18974332 ttcatatctgcattggtttttcggtggatatatatatgcacta----------ggcttatagtttttttggaaataatctagtatgataatggatatttt 18974421  T
Q  189 ggagacaataggttggaccttcatccctgatttcattaatactac 233  Q
    |||||||||||||||||| ||||||| |||||  |||| ||||||    
T  18974422 ggagacaataggttggactttcatccttgattctattactactac 18974466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 228 - 322
Target Start/End: Complemental strand, 20133967 - 20133873
Alignment:
Q  228 tactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc 322  Q
    ||||||| | ||||| |||||||||||| |||||||||||| |||||||||||||||||  |||| ||||||||| || ||||| ||| ||||||    
T  20133967 tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc 20133873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 736 - 770
Target Start/End: Original strand, 3301781 - 3301815
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaa 770  Q
    |||||||||||||||||||||||||||||||||||    
T  3301781 tacatcatatgtggataataagtcttatagtcaaa 3301815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 31709404 - 31709462
Alignment:
Q  35 taaatatcagtaatactgtgccacaggttgttactttctaactttgtt-ctctccgttcat 94  Q
    |||||||||||||||| ||| ||  ||||||||||||||||||||||| ||||||||||||    
T  31709404 taaatatcagtaataccgtgtca--ggttgttactttctaactttgttactctccgttcat 31709462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 772
Target Start/End: Original strand, 25556803 - 25556839
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaatt 772  Q
    |||||||||||||||||||||||||||||| ||||||    
T  25556803 tacatcatatgtggataataagtcttatagacaaatt 25556839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 31710091 - 31710127
Alignment:
Q  90 ttcatatctgcattggtttttcggtggatatatatat 126  Q
    |||||||| ||||||||||||||||||||||||||||    
T  31710091 ttcatatccgcattggtttttcggtggatatatatat 31710127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 14673771 - 14673808
Alignment:
Q  58 caggttgttactttctaactttgtt-ctctccgttcat 94  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14673771 caggttgttactttctaactttgttactctccgttcat 14673808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 18973669 - 18973727
Alignment:
Q  35 taaatatcagtaatactgtgccacaggttgttactttctaactttgtt-ctctccgttcat 94  Q
    |||||||||||||||| ||| ||  |||||||||||| |||||||||| ||||||||||||    
T  18973669 taaatatcagtaataccgtgtca--ggttgttactttgtaactttgttactctccgttcat 18973727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 36283715 - 36283670
Alignment:
Q  390 ggaggtcaattcatcaccatcatagtcatccttattaacaggcgga 435  Q
    |||| |||| ||||||||||||||||||| ||||| ||||||||||    
T  36283715 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 36283670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 355 - 726
Target Start/End: Complemental strand, 17373 - 17004
Alignment:
Q  355 aacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattcatcaccatcatagtcatccttattaacaggcggatatcatatacaatcatatc 454  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| ||    
T  17373 aacgccaacgacgtcacgaagatacgaccgacagtggagttcaattcgtcaccatcatagtcatccttatgaacaggcggatataatatacaatcatgtc 17274  T
Q  455 acgagaaaggaacccggataaatgctcgaagcagcaaggaccgaggcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttat 554  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17273 acgagaaaggaacccggataaatgctcaaagcagcaaggaccgaagcggcgtcattcaaaagaaaattaacgacaaggttctatattcttgatcttttat 17174  T
Q  555 gtatagggctgatatatgtcttcaaatacttcaaaagtaattagtaacagctcaggacttcataatttgtctttaatcgatattatataccttccaacta 654  Q
    |  |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  17173 g--tagggctgatatatgtcttcaaatacttcaaaagtaattagtgacaactcaggacttcataatttgtctttaatcgatattatatatcttccaatta 17076  T
Q  655 tttttctgacgcatatgtgcatattaaagaaaaccatccaggttctatatttcctcaattaattcatagcac 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17075 tttttctgacgcatatgtgcatattaaagaaaaccatccaggttctatatttcctcaattaattcatagcac 17004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 390 - 726
Target Start/End: Original strand, 12325893 - 12326224
Alignment:
Q  390 ggaggtcaattcatcaccatcatagtcatccttattaacaggcggatatcatatacaatcatatcacgagaaaggaacccggataaatgctcgaagcagc 489  Q
    |||| |||| || |||||||||||||| ||||||| ||||||| ||||||||||||||||||     ||| || |||||||||||||||||| |||||||    
T  12325893 ggagctcaaatcgtcaccatcatagtcctccttatgaacaggcagatatcatatacaatcat-----gaggaatgaacccggataaatgctcaaagcagc 12325987  T
Q  490 aaggaccgaggcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaa 589  Q
     |||||||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||    
T  12325988 gaggaccgaagcggcaccattcaaaagaaaattaatgacaaggttctatattcctgatcttttatgtatagggctgatatatgtcttcaaacatttcaaa 12326087  T
Q  590 agtaattagtaacagctcaggacttcataatttgtctttaatcgatattatataccttccaactatttttctgacgcatatgtgcatattaaagaaaacc 689  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||   ||||| ||||||||||||||||||    
T  12326088 agtaattagtaacaactcaggacttcatattttatctttaatcgatatcatatatcttccaactatttttctggtacatatatgcatattaaagaaaacc 12326187  T
Q  690 atccaggttctatatttcctcaattaattcatagcac 726  Q
    |||||||||||||||||||||||||||||||||||||    
T  12326188 atccaggttctatatttcctcaattaattcatagcac 12326224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 173 - 322
Target Start/End: Original strand, 12325739 - 12325891
Alignment:
Q  173 tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacaacaagggtgttgtacttcctacgtaattttcaggg 269  Q
    |||||||  ||||| |||||||||||| |||||| ||||||| |||||   | | || ||||||| ||||||| |||||||||||| |||||||||||||    
T  12325739 tgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcaggg 12325838  T
Q  270 cctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc 322  Q
    ||||||||||||||||| ||||| ||||||||| || ||||| ||| ||||||    
T  12325839 cctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc 12325891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 12325692 - 12325724
Alignment:
Q  90 ttcatatctgcattggtttttcggtggatatat 122  Q
    |||||||||||||||||||||||||||||||||    
T  12325692 ttcatatctgcattggtttttcggtggatatat 12325724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 160 - 418
Target Start/End: Original strand, 8165820 - 8166086
Alignment:
Q  160 caataatctagtatgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactacaacaagggtgttgtacttcctacgta 259  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| ||||   ||| |||||| |||||| |||    
T  8165820 caataatctagtatgataattgatattttggagacaataggttggaccttcattcttgatttcattaataccacaa---gggcgttgtatttcctaagta 8165916  T
Q  260 attttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatcggtaaa-----------tgaagtggagtgtgtggctt 348  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||| || ||| ||||||||||||            |||||||| |||| |||||    
T  8165917 attttcagggcctcaagattcaacgaatgaactcaatttctcatttccaacaacccggttatcggtaaaggaagtggaatggaagtggaatgtgcggctt 8166016  T
Q  349 tctctcaacgccaacgacgtcacgaagatccgaccgacggtggaggtcaattcatcaccatcatagtcat 418  Q
    ||||||||| |||||||||||||||||||| || |||| ||||||  |||||| ||||||||||||||||    
T  8166017 tctctcaacaccaacgacgtcacgaagatctgatcgacagtggagcccaattcgtcaccatcatagtcat 8166086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 183 - 451
Target Start/End: Original strand, 11203450 - 11203709
Alignment:
Q  183 tattttggagacaataggttggaccttcatccctgatttcattaatactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaa 282  Q
    |||| |||||||||||| |||||| ||||||| ||||||||||| ||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  11203450 tattctggagacaatagattggactttcatccttgatttcattactactacagcaaaggtattgtacttcctaagtaattttcagggcctcaagattcaa 11203549  T
Q  283 caaatgaactgaatttctcatctccatcagcccagttatcggtaaatgaagtggagtgtgtggctttctctcaacgccaacgacgtcacgaagatccgac 382  Q
    |||||||||| || |||||  || ||||| ||| ||||||     ||  |||| | ||| |||||||||||||||||||||||||||   ||||||| |     
T  11203550 caaatgaactcaacttctcccctacatcaacccggttatc-----at-cagtgaaatgtatggctttctctcaacgccaacgacgtc---aagatccaat 11203640  T
Q  383 cgacggtggaggtcaattcatcaccatcatagtcatccttattaacaggcggatatcatatacaatcat 451  Q
    | || | |||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  11203641 caacagaggagctcaattcgtcaccatcatagtcttccttataaacaggcggatatcatatacaatcat 11203709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 736 - 772
Target Start/End: Original strand, 40934906 - 40934942
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaatt 772  Q
    |||||||||||||||||||||||||||||||||||||    
T  40934906 tacatcatatgtggataataagtcttatagtcaaatt 40934942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 736 - 770
Target Start/End: Original strand, 38838760 - 38838794
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaa 770  Q
    |||||||||||||||||||||||||||||||||||    
T  38838760 tacatcatatgtggataataagtcttatagtcaaa 38838794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 464 - 609
Target Start/End: Original strand, 20196581 - 20196726
Alignment:
Q  464 gaacccggataaatgctcgaagcagcaaggaccgaggcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggc 563  Q
    |||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||    
T  20196581 gaacacggataaatgctcaaagcagcgaggaccgaagcggcatcattcaaaagaaaattaatgacaaggttctatattcttgatctttaacgtatagggc 20196680  T
Q  564 tgatatatgtcttcaaatacttcaaaagtaattagtaacagctcag 609  Q
    | | ||||||||||||| | |||||| ||||||||| ||| |||||    
T  20196681 ttaaatatgtcttcaaacatttcaaatgtaattagtgacaactcag 20196726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 772
Target Start/End: Complemental strand, 24279161 - 24279125
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaatt 772  Q
    |||||||||||| ||||||||||||||||||||||||    
T  24279161 tacatcatatgtagataataagtcttatagtcaaatt 24279125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 9e-29; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 5331542 - 5331406
Alignment:
Q  90 ttcatatctgcattggtttttcggtggatatatatatgcactgtgctgcaattggcttatagtttttt---ggcaataatctagtatgataatggatatt 186  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||   || |||||||||||||||||| |||||||    
T  5331542 ttcatatctgcattggtttttcggtggatatatatatgcacta----------ggcttatagtttttttttggaaataatctagtatgataagggatatt 5331453  T
Q  187 ttggagacaataggttggaccttcatccctgatttcattaatactac 233  Q
    |||||||||||||||||||| ||||||| |||||  |||| ||||||    
T  5331452 ttggagacaataggttggactttcatccttgattctattactactac 5331406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 44358104 - 44358198
Alignment:
Q  228 tactacaacaagggtgttgtacttcctacgtaattttcagggcctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc 322  Q
    ||||||| | ||||| |||||||||||| |||||||||||| |||||||||||||||||  |||| ||||||||| || ||||| ||| ||||||    
T  44358104 tactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc 44358198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 5332205 - 5332147
Alignment:
Q  35 taaatatcagtaatactgtgccacaggttgttactttctaactttgtt-ctctccgttcat 94  Q
    |||||||||||||||| ||| ||  ||||||||||||||||||||||| ||||||||||||    
T  5332205 taaatatcagtaataccgtgtca--ggttgttactttctaactttgttactctccgttcat 5332147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 772
Target Start/End: Complemental strand, 360176 - 360140
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaatt 772  Q
    |||||||||||||||||||||||||||||| ||||||    
T  360176 tacatcatatgtggataataagtcttatagacaaatt 360140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 11098606 - 11098651
Alignment:
Q  390 ggaggtcaattcatcaccatcatagtcatccttattaacaggcgga 435  Q
    |||| |||| ||||||||||||||||||| ||||| ||||||||||    
T  11098606 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 11098651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 173 - 322
Target Start/End: Original strand, 47845 - 47997
Alignment:
Q  173 tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacaacaagggtgttgtacttcctacgtaattttcaggg 269  Q
    |||||||  ||||| |||||||||||| |||||| ||||||| |||||   | | || ||||||| |||| || |||||||||||| |||||||||||||    
T  47845 tgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagagtattgtacttcctaagtaattttcaggg 47944  T
Q  270 cctcaagattcaacaaatgaactgaatttctcatctccatcagcccagttatc 322  Q
    ||||||||||||||||| ||||| ||||||||| || ||||| ||| ||||||    
T  47945 cctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatc 47997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 736 - 772
Target Start/End: Original strand, 148460 - 148496
Alignment:
Q  736 tacatcatatgtggataataagtcttatagtcaaatt 772  Q
    |||||||||||||||||||||||||||||||||||||    
T  148460 tacatcatatgtggataataagtcttatagtcaaatt 148496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 429
Target Start/End: Complemental strand, 128723 - 128684
Alignment:
Q  390 ggaggtcaattcatcaccatcatagtcatccttattaaca 429  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  128723 ggagctcaattcatcaccatcatagtcatccttatgaaca 128684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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