View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8933_low_3 (Length: 480)
Name: NF8933_low_3
Description: NF8933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8933_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 18057860 - 18057668
Alignment:
| Q |
45 |
gggactcaggtattgataccgacatatacatgcgaaagaaaacacgcaatcccctgtctcacacccttttgccgaaacaaagctccactaccgcaaaaac |
144 |
Q |
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| T |
18057860 |
gggactcaggtattgatgccgacatatacatgcgaaagaaaacacgcaaacccctgtctcacacccttttgccgaaacaaagctccactaccgcaaaaac |
18057761 |
T |
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| Q |
145 |
ccaacatgaaccgcaccgccaaacaatataggcaaggcaaaacagaaaaatctgcagaccaaaacacccttccagacataaccgaatagctga |
237 |
Q |
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| T |
18057760 |
ccaacatgaaccgcaccgccaaacaatataggcaaggcaaaacattaaaatttgttgatcaaaacacccttccagacataaccgaacagctga |
18057668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 313 - 466
Target Start/End: Complemental strand, 18057590 - 18057437
Alignment:
| Q |
313 |
tagcagcccggatggtatccctttatgtccgcgaagctctcctagcaaggcaaaattggggattccaacaccactcgaaaatgagacaagtcggaatgtg |
412 |
Q |
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| T |
18057590 |
tagcagcccagatggtatccctttatgtccgcgaagctctcctagcaaggcaaaattggggattccaacgccactcgaaaatgagacaagtcggaatgtg |
18057491 |
T |
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| Q |
413 |
catcctactacacgtccacctccaagacaatactttcacctcctccatgatgtc |
466 |
Q |
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| T |
18057490 |
catcctactacacgtccacctccaagacaatactttcacctcctccataatgtc |
18057437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 16687751 - 16687653
Alignment:
| Q |
353 |
cctagcaaggcaaaattggggattccaacaccactcgaaaatgagacaagtcggaatgtgcatcctactacacgtccacctccaagacaatactttcac |
451 |
Q |
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| T |
16687751 |
cctagcaaggcacaatttgggattccaacaccattcgaaaaatagacaagccagcaaatgcatcctacaaagcacccacctccaagacaacactttcac |
16687653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 17661987 - 17661889
Alignment:
| Q |
353 |
cctagcaaggcaaaattggggattccaacaccactcgaaaatgagacaagtcggaatgtgcatcctactacacgtccacctccaagacaatactttcac |
451 |
Q |
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| T |
17661987 |
cctagcaaggcacaatttgggattccaacaccattcgaaaaatagacaagccagcaaatgcatcctacaaagcacccacctccaagacaacactttcac |
17661889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 459
Target Start/End: Complemental strand, 8453288 - 8453182
Alignment:
| Q |
353 |
cctagcaaggcaaaattggggattccaacaccactcgaaaatgagacaagtcggaatgtgcatcctactacacgtccacctccaagacaatactttcacc |
452 |
Q |
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| T |
8453288 |
cctaccaaggcacaattgggggttccaacatcactcataaaaaaggcatgccggaatatgcatcctactcaacatccatctccaagacaacaccttcacc |
8453189 |
T |
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| Q |
453 |
tcctcca |
459 |
Q |
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||||||| |
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| T |
8453188 |
tcctcca |
8453182 |
T |
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