View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8933_low_4 (Length: 448)

Name: NF8933_low_4
Description: NF8933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8933_low_4
NF8933_low_4
[»] chr1 (11 HSPs)
chr1 (18-432)||(39828215-39828612)
chr1 (73-118)||(17080896-17080941)
chr1 (63-120)||(3921656-3921713)
chr1 (82-131)||(41017406-41017455)
chr1 (74-118)||(43942324-43942368)
chr1 (81-119)||(11634138-11634176)
chr1 (75-116)||(10799671-10799712)
chr1 (71-148)||(14332406-14332482)
chr1 (75-104)||(33970959-33970988)
chr1 (81-118)||(43609833-43609870)
chr1 (69-117)||(21057778-21057826)
[»] chr7 (11 HSPs)
chr7 (232-423)||(44034675-44034866)
chr7 (81-134)||(36314626-36314679)
chr7 (73-133)||(46644687-46644747)
chr7 (60-119)||(4909137-4909196)
chr7 (73-136)||(15902821-15902884)
chr7 (73-180)||(19206049-19206156)
chr7 (81-144)||(44172879-44172942)
chr7 (81-131)||(21247738-21247788)
chr7 (74-152)||(23128642-23128720)
chr7 (74-119)||(38134420-38134465)
chr7 (69-105)||(927865-927901)
[»] chr6 (7 HSPs)
chr6 (54-136)||(15443675-15443757)
chr6 (61-119)||(9024190-9024248)
chr6 (80-136)||(29049891-29049945)
chr6 (71-118)||(4859128-4859175)
chr6 (55-125)||(12627824-12627894)
chr6 (69-119)||(31115480-31115530)
chr6 (55-116)||(21885773-21885834)
[»] chr2 (7 HSPs)
chr2 (132-203)||(4817813-4817884)
chr2 (81-146)||(4690297-4690362)
chr2 (61-131)||(31026682-31026752)
chr2 (69-116)||(19613630-19613677)
chr2 (69-116)||(44605156-44605203)
chr2 (75-119)||(18570973-18571017)
chr2 (54-202)||(36756275-36756423)
[»] chr5 (11 HSPs)
chr5 (56-136)||(38749560-38749640)
chr5 (60-136)||(2039848-2039922)
chr5 (71-131)||(28296325-28296385)
chr5 (69-120)||(11596468-11596519)
chr5 (81-203)||(16864025-16864145)
chr5 (73-119)||(2577194-2577240)
chr5 (73-115)||(9449468-9449510)
chr5 (81-119)||(18607111-18607149)
chr5 (69-103)||(39424636-39424670)
chr5 (74-119)||(19293437-19293482)
chr5 (69-102)||(31695426-31695459)
[»] chr3 (10 HSPs)
chr3 (71-158)||(21478680-21478767)
chr3 (61-116)||(41319327-41319382)
chr3 (61-116)||(46191362-46191417)
chr3 (82-203)||(8039765-8039886)
chr3 (74-116)||(17568700-17568742)
chr3 (162-203)||(15796224-15796265)
chr3 (62-119)||(25074777-25074834)
chr3 (169-202)||(30582250-30582283)
chr3 (74-118)||(28590873-28590917)
chr3 (61-117)||(46190991-46191047)
[»] chr8 (10 HSPs)
chr8 (75-119)||(37225757-37225801)
chr8 (69-115)||(14227217-14227263)
chr8 (81-130)||(3508059-3508108)
chr8 (74-131)||(12985392-12985449)
chr8 (69-104)||(2648277-2648312)
chr8 (81-203)||(28819198-28819320)
chr8 (73-119)||(40063950-40063996)
chr8 (61-118)||(26915255-26915312)
chr8 (69-189)||(4122193-4122313)
chr8 (54-118)||(42874502-42874566)
[»] scaffold0022 (1 HSPs)
scaffold0022 (61-136)||(99880-99955)
[»] chr4 (15 HSPs)
chr4 (69-131)||(21345535-21345597)
chr4 (49-121)||(34589718-34589790)
chr4 (84-203)||(5225543-5225662)
chr4 (140-203)||(5654504-5654567)
chr4 (64-118)||(15969343-15969397)
chr4 (74-136)||(18513238-18513300)
chr4 (82-139)||(2976702-2976759)
chr4 (75-116)||(7214539-7214580)
chr4 (82-119)||(33950144-33950181)
chr4 (73-118)||(35212742-35212787)
chr4 (76-131)||(436953-437009)
chr4 (71-119)||(5654605-5654653)
chr4 (80-136)||(9906780-9906836)
chr4 (72-104)||(23915127-23915159)
chr4 (69-120)||(43476794-43476846)
[»] scaffold0085 (1 HSPs)
scaffold0085 (69-113)||(26388-26432)
[»] scaffold0024 (1 HSPs)
scaffold0024 (69-117)||(18124-18172)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 39828215 - 39828612
Alignment:
Q  18 atatatatggttatatactatgaaacacaaaactcagacacaaacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatc 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39828215 atatatatggttatatactatgaagcacaaaactcagacacaaacacggacacgtcgacaccaataataatttgagaaaataacatactttaatctaatc 39828314  T
Q  118 atgtatgttggtgttgtgttagtgtcagacatgatacatatttgacaccggaacacgcctaattcaaagagtatttgtgcttcataagttgtatatctat 217  Q
    || |||||                 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  39828315 atatatgt-----------------cagacatgatacatatttgacaccggaacgcgcctaatccaaagagtatttgtgcttcataagttatatatctat 39828397  T
Q  218 cgacttattggaccccaaataaaaataggtctagccttcaaaagcaactgagcaagcttattttggacattgaggcttatgacttgattaagaccaccta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39828398 cgacttattggaccccaaataaaaataggtctagccttcaaaagcaactgagcaagcttattttggacattgaggcttatgacttgattaacaccaccta 39828497  T
Q  318 caaattgttgtcctataaacacagctggcacacttggtcgacaaccaagctgaaccaatgcactttctattttctcaccatttaccattttgtcaatctc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39828498 caaattgttgtcctataaacacagctggcacacttggtcgacaaccaagctgaaccaatgcactttctattttctcaccatttaccattttgtcaatctc 39828597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 17080941 - 17080896
Alignment:
Q  73 cgacaccaataataatttgagaaaataacatactttaatgtaatca 118  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  17080941 cgacaccaataataatttgagaaaataacataattgaatgtaatca 17080896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 3921656 - 3921713
Alignment:
Q  63 acggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatg 120  Q
    ||||| ||||| ||| |||||||||||||||||||| ||||| || ||||||||||||    
T  3921656 acggacacgtcaacatcaataataatttgagaaaatgacataattcaatgtaatcatg 3921713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 41017455 - 41017406
Alignment:
Q  82 taataatttgagaaaataacatactttaatgtaatcatgtatgttggtgt 131  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||    
T  41017455 taataatttgagaaaatgacataatttaatgtaattatatatgttggtgt 41017406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 43942324 - 43942368
Alignment:
Q  74 gacaccaataataatttgagaaaataacatactttaatgtaatca 118  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  43942324 gacaccaataatgatttgagaaaataacataattcaatgtaatca 43942368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 11634176 - 11634138
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatcat 119  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  11634176 ataataatttgagaaaacaacataatttaatgtaatcat 11634138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 10799671 - 10799712
Alignment:
Q  75 acaccaataataatttgagaaaataacatactttaatgtaat 116  Q
    ||||| || ||||||||||||||||||||| |||||||||||    
T  10799671 acacccatgataatttgagaaaataacataatttaatgtaat 10799712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 14332406 - 14332482
Alignment:
Q  71 gtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagaca 148  Q
    ||||||||| |||| ||||||||||||| ||||| || ||||||||||  ||||| ||||||| ||| ||||| ||||    
T  14332406 gtcgacaccgataa-aatttgagaaaatgacataattcaatgtaatcacatatgtcggtgttgcgttggtgtcggaca 14332482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 104
Target Start/End: Original strand, 33970959 - 33970988
Alignment:
Q  75 acaccaataataatttgagaaaataacata 104  Q
    ||||||||||||||||||||||||||||||    
T  33970959 acaccaataataatttgagaaaataacata 33970988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 43609870 - 43609833
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatca 118  Q
    |||||||||||||||||||||||| || ||||||||||    
T  43609870 ataataatttgagaaaataacataattgaatgtaatca 43609833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 21057778 - 21057826
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgtaatc 117  Q
    |||||||||||  ||||||||| ||||||||||||| || |||||||||    
T  21057778 acgtcgacaccgctaataattttagaaaataacataattgaatgtaatc 21057826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 423
Target Start/End: Complemental strand, 44034866 - 44034675
Alignment:
Q  232 ccaaataaaaataggtctagccttcaaaagcaactgagcaagcttattttggacattgaggcttatgacttgattaagaccacctacaaattgttgtcct 331  Q
    ||||| ||| |||| | ||||||| |||||||| ||| |||| || || || |||||||||||||||| || || || ||||||||  ||||||||||||    
T  44034866 ccaaaaaaatatagctttagcctttaaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcct 44034767  T
Q  332 ataaacacagctggcacacttggtcgacaaccaagctgaaccaatgcactttctattttctcaccatttaccattttgtcaatctcaataac 423  Q
    || || ||||| || ||| |||||| ||  |||||||||| || ||| || |||||||  |  ||||||  |||||| ||||||||||||||    
T  44034766 atgaaaacagcaggtacagttggtctacgtccaagctgaatcagtgctctctctatttgttgtccatttggcattttatcaatctcaataac 44034675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 36314679 - 36314626
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgt 134  Q
    |||||||||||||||||| ||||| || ||||||||||| | ||||||||||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgt 36314626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 46644747 - 46644687
Alignment:
Q  73 cgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttg 133  Q
    |||||||||||||||||||| ||||| | ||| |||| ||||||||| ||||||| |||||    
T  46644747 cgacaccaataataatttgaaaaaattatataatttagtgtaatcatctatgttgttgttg 46644687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 4909137 - 4909196
Alignment:
Q  60 aacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    |||||||| | || ||||||||||||||||||||||||| ||||| || | |||||||||    
T  4909137 aacacggacaggttgacaccaataataatttgagaaaattacataattcattgtaatcat 4909196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 15902821 - 15902884
Alignment:
Q  73 cgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgt 136  Q
    |||||||||||||||||||| ||||| ||||| |||| |||||| || | ||| ||||||||||    
T  15902821 cgacaccaataataatttgataaaatcacataatttagtgtaattatatgtgtcggtgttgtgt 15902884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 19206049 - 19206156
Alignment:
Q  73 cgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagacatgatacatatttgacaccggaaca 172  Q
    |||||||  ||||||||||||||||| ||||| || | | |||| || | ||| |||||  |||| |||||||| |||| |||||| ||||||||||| |    
T  19206049 cgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtcttgttggtgtcagagatgacacatatctgacaccggaata 19206148  T
Q  173 cgcctaat 180  Q
    || |||||    
T  19206149 cggctaat 19206156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 44172942 - 44172879
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtca 144  Q
    |||||||||||||||||| ||||| || ||||||||||  | |||| |||||||||| ||||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgtca 44172879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 21247788 - 21247738
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgt 131  Q
    |||||||||||||||||| || || || ||||||||||||| |||||||||    
T  21247788 ataataatttgagaaaatgacgtaattcaatgtaatcatgtgtgttggtgt 21247738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 23128720 - 23128642
Alignment:
Q  74 gacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagacatgat 152  Q
    ||||||||||||||||||||||||  | ||| || | ||||||||| | ||| ||||||||||| |||||  |||||||    
T  23128720 gacaccaataataatttgagaaaaccatataattcagtgtaatcatatgtgtcggtgttgtgttggtgtcgaacatgat 23128642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 38134465 - 38134420
Alignment:
Q  74 gacaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    |||||| |||||||||||||||||| ||||| || |||||||||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatcat 38134420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 927901 - 927865
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatac 105  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  927901 acgtcgacactaataataatttgagaaaatgacatac 927865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 15443675 - 15443757
Alignment:
Q  54 gacacaaacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgt 136  Q
    ||||| ||||| || ||||||||| |||||||||||||||||||||||||| || ||| |||| || ||||||||||||||||    
T  15443675 gacacgaacactgacacgtcgacatcaataataatttgagaaaataacataattcaatataattatatatgttggtgttgtgt 15443757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 9024248 - 9024190
Alignment:
Q  61 acacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    ||||||| |||||||||| ||| ||||||||||||||| ||||| || |||||||||||    
T  9024248 acacggacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcat 9024190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 29049891 - 29049945
Alignment:
Q  80 aataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgt 136  Q
    ||||||||||||||||||| ||||| || ||||||||||||  ||||||||||||||    
T  29049891 aataataatttgagaaaattacataattcaatgtaatcatg--tgttggtgttgtgt 29049945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 4859175 - 4859128
Alignment:
Q  71 gtcgacaccaataataatttgagaaaataacatactttaatgtaatca 118  Q
    |||||||||||||||||||||||||||| ||||| |  ||||||||||    
T  4859175 gtcgacaccaataataatttgagaaaatgacataatccaatgtaatca 4859128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 12627894 - 12627824
Alignment:
Q  55 acacaaacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgt 125  Q
    ||||||||||  | ||||||||||  ||| |||||| ||||||||||||| || ||||||||||| |||||    
T  12627894 acacaaacactaacacgtcgacacggatactaatttaagaaaataacatatttcaatgtaatcatatatgt 12627824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 31115480 - 31115530
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    ||||||||||||||||||||||||| |||||||| | || ||||| |||||    
T  31115480 acgtcgacaccaataataatttgagtaaataacacaattcaatgtgatcat 31115530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 21885773 - 21885834
Alignment:
Q  55 acacaaacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaat 116  Q
    ||||| ||||||| |||| |||||| |||||||||| | ||||||||||| |||||| ||||    
T  21885773 acacatacacggatacgttgacaccgataataatttaaaaaaataacataatttaatctaat 21885834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 4817884 - 4817813
Alignment:
Q  132 tgtgttagtgtcagacatgatacatatttgacaccggaacacgcctaattcaaagagtatttgtgcttcata 203  Q
    |||||| |||||  ||||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||    
T  4817884 tgtgttggtgtcgaacatgatacatatttgataccggaacacgcataattcaatgagtatatgtgcttcata 4817813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 4690297 - 4690362
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcaga 146  Q
    |||||||||||||||||||||||| ||||||  |||||| |||||| |||| ||||| ||||||||    
T  4690297 ataataatttgagaaaataacataatttaatacaatcatatatgttagtgtcgtgttcgtgtcaga 4690362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 31026682 - 31026752
Alignment:
Q  61 acacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgt 131  Q
    ||||||| ||||||| ||| |||||||||| ||||||| ||||| || ||||||||||| ||||| |||||    
T  31026682 acacggatacgtcgagaccgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgt 31026752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 19613677 - 19613630
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgtaat 116  Q
    ||||||||||  |||||||||||||||||||||||| || ||||||||    
T  19613677 acgtcgacactcataataatttgagaaaataacataattcaatgtaat 19613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 44605203 - 44605156
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgtaat 116  Q
    ||||| || ||||||||||||||||||||||||||| || ||||||||    
T  44605203 acgtcaacgccaataataatttgagaaaataacataattcaatgtaat 44605156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 18570973 - 18571017
Alignment:
Q  75 acaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    ||||| |||||||||||||||||| ||||| || |||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcat 18571017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 36756423 - 36756275
Alignment:
Q  54 gacacaaacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagacatgata 153  Q
    |||||| |||| || |||||||||| | |||||||||||  |||||||||| || | |||||| ||   ||| ||||| |||||||||||  |||  | |    
T  36756423 gacacagacactgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaattataagtgtcggtgtcgtgttagtgtcgaacacaaca 36756324  T
Q  154 catatttgacaccggaacacgcctaattcaaagagtatttgtgcttcat 202  Q
    ||| |  ||||||| |||||||||||| | | |||| | ||||||||||    
T  36756323 catgtccgacaccgcaacacgcctaatcctaggagtgtctgtgcttcat 36756275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 38749640 - 38749560
Alignment:
Q  56 cacaaacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgt 136  Q
    |||||||||||| | ||||||||| |||||||||||| ||||| ||||| || |||||||| || | ||||||||||||||    
T  38749640 cacaaacacggacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgt 38749560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 2039922 - 2039848
Alignment:
Q  60 aacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgt 136  Q
    |||||||| |||||||||||  ||||||||||||||||| ||||  || ||||||||||||||  ||||||||||||    
T  2039922 aacacggacacgtcgacaccggtaataatttgagaaaatgacatgattcaatgtaatcatgta--ttggtgttgtgt 2039848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 28296325 - 28296385
Alignment:
Q  71 gtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgt 131  Q
    ||||||||| |||||||||||||||||| ||||| || |||||| |||| | |||||||||    
T  28296325 gtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgt 28296385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 11596519 - 11596468
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatg 120  Q
    ||||||| ||| |||||||||||||||||| ||||| || ||||||||||||    
T  11596519 acgtcgataccgataataatttgagaaaatgacataattcaatgtaatcatg 11596468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 16864025 - 16864145
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagacatgatacatatttgacaccggaacacgcctaat 180  Q
    ||||||||  |||||||| ||||| || |||||| ||||||||   |||||  |||| |  ||||||| ||||||||| |||||| ||||||||||||||    
T  16864025 ataataatgcgagaaaatgacataattcaatgtactcatgtatc--ggtgtcatgttggcatcagacacgatacatatctgacactggaacacgcctaat 16864122  T
Q  181 tcaaagagtatttgtgcttcata 203  Q
     | |  ||||| |||||||||||    
T  16864123 ccgagaagtatatgtgcttcata 16864145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 2577240 - 2577194
Alignment:
Q  73 cgacaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    ||||||| |||||||||||||||||| ||||| |||| |||||||||    
T  2577240 cgacaccgataataatttgagaaaatgacataatttagtgtaatcat 2577194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 9449468 - 9449510
Alignment:
Q  73 cgacaccaataataatttgagaaaataacatactttaatgtaa 115  Q
    |||||||||||||||||||||||||| ||||| || |||||||    
T  9449468 cgacaccaataataatttgagaaaatcacataattcaatgtaa 9449510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 18607149 - 18607111
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatcat 119  Q
    |||||||||||||||||||||||| || |||||||||||    
T  18607149 ataataatttgagaaaataacataattcaatgtaatcat 18607111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 39424636 - 39424670
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacat 103  Q
    |||||||||||||||||||||||||||||| ||||    
T  39424636 acgtcgacaccaataataatttgagaaaatgacat 39424670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 19293482 - 19293437
Alignment:
Q  74 gacaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    ||||||||||||||||| ||||||||||||| || | |||||||||    
T  19293482 gacaccaataataatttaagaaaataacataattaagtgtaatcat 19293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 31695459 - 31695426
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataaca 102  Q
    ||||||||| ||||||||||||||||||||||||    
T  31695459 acgtcgacatcaataataatttgagaaaataaca 31695426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 21478680 - 21478767
Alignment:
Q  71 gtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagacatgatacatat 158  Q
    |||||||||||||||||||| | || || |||||  | ||||||||||| | |||||||||||| || ||||||||||||| ||||||    
T  21478680 gtcgacaccaataataatttcacaagatgacataaatcaatgtaatcatatgtgttggtgttgttttggtgtcagacatgaaacatat 21478767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 41319382 - 41319327
Alignment:
Q  61 acacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaat 116  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||| || ||||||||    
T  41319382 acacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 46191417 - 46191362
Alignment:
Q  61 acacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaat 116  Q
    ||||||| || ||||||||||||||||||||||||||| ||||| || ||||||||    
T  46191417 acacggacacatcgacaccaataataatttgagaaaatcacataattaaatgtaat 46191362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 8039886 - 8039765
Alignment:
Q  82 taataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagacatgatacatatttgacaccggaacacgcctaatt 181  Q
    ||||||||||||||||| | ||| || | |||||| || | ||| ||||| ||||  ||||| ||||||| |||| |  |||||||| |||||| ||||     
T  8039886 taataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatc 8039787  T
Q  182 caaagagtatttgtgcttcata 203  Q
    | |||||||| |||||||||||    
T  8039786 cgaagagtatctgtgcttcata 8039765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 17568742 - 17568700
Alignment:
Q  74 gacaccaataataatttgagaaaataacatactttaatgtaat 116  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||    
T  17568742 gacaccattaataatttgagaaaattacataatttaatgtaat 17568700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 15796265 - 15796224
Alignment:
Q  162 acaccggaacacgcctaattcaaagagtatttgtgcttcata 203  Q
    ||||||||||||||||||| |||||||| || ||||||||||    
T  15796265 acaccggaacacgcctaatccaaagagtgttcgtgcttcata 15796224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 25074777 - 25074834
Alignment:
Q  62 cacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    |||||| ||| ||||||| |||||||||||||||||| ||||| || | |||||||||    
T  25074777 cacggacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatcat 25074834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 30582283 - 30582250
Alignment:
Q  169 aacacgcctaattcaaagagtatttgtgcttcat 202  Q
    |||||||||||||||||||||||||||| |||||    
T  30582283 aacacgcctaattcaaagagtatttgtgtttcat 30582250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 28590873 - 28590917
Alignment:
Q  74 gacaccaataataatttgagaaaataacatactttaatgtaatca 118  Q
    |||||| |||||||||||||||||||||| | || ||||||||||    
T  28590873 gacaccgataataatttgagaaaataacaaagttgaatgtaatca 28590917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 46191047 - 46190991
Alignment:
Q  61 acacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatc 117  Q
    ||||||| |||||||||||||||||||| ||| ||||| ||| | || |||||||||    
T  46191047 acacggacacgtcgacaccaataataatctgaaaaaattacaaaattaaatgtaatc 46190991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 37225801 - 37225757
Alignment:
Q  75 acaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  37225801 acaccaataataatttgagaaaataacataattcaatgtaatcat 37225757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 14227217 - 14227263
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgtaa 115  Q
    ||||| |||||||||||||||||||||||||||||| || |||||||    
T  14227217 acgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 3508059 - 3508108
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatcatgtatgttggtg 130  Q
    |||||||||||||||||||||||| || ||||||||||| | ||||||||    
T  3508059 ataataatttgagaaaataacataattcaatgtaatcatatgtgttggtg 3508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 12985392 - 12985449
Alignment:
Q  74 gacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgt 131  Q
    |||||| |||||||||||||||||| ||||| || ||||||||||| ||||| |||||    
T  12985392 gacacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgt 12985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 2648312 - 2648277
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacata 104  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2648312 acgtcaacaccaataataatttgagaaaataacata 2648277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 28819198 - 28819320
Alignment:
Q  81 ataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagacatgatacatatttgacaccggaacacgcctaat 180  Q
    ||||||||||||||||||  ||||  | |||| |||||| | ||| ||| ||||||  |||||||||| ||||  |||   ||||||||||||| |||||    
T  28819198 ataataatttgagaaaatggcataactcaatgcaatcatatgtgtcggttttgtgtcggtgtcagacacgatatgtatccaacaccggaacacggctaat 28819297  T
Q  181 tcaaagagtatttgtgcttcata 203  Q
     | | |||||| |||||||||||    
T  28819298 ccgaggagtatatgtgcttcata 28819320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 40063950 - 40063996
Alignment:
Q  73 cgacaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    |||||||||||||||||||||||||| ||||| || | |||||||||    
T  40063950 cgacaccaataataatttgagaaaatgacataattcattgtaatcat 40063996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 26915312 - 26915255
Alignment:
Q  61 acacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatca 118  Q
    ||||||| ||||||||||  |||| | ||||||||||| ||||| |||||||||||||    
T  26915312 acacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatca 26915255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 4122313 - 4122193
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagacatgatacatatttgacaccgg 168  Q
    ||||||||| || |||||||| || ||||| | ||| || | |||||| || | ||| |||||||||| | ||||| ||| || || | || ||||||||    
T  4122313 acgtcgacatcattaataattagataaaattatataattcattgtaattatatgtgtcggtgttgtgtcaatgtcaaacacgacacgtgttggacaccgg 4122214  T
Q  169 aacacgcctaattcaaagagt 189  Q
    |||||| ||||| ||||||||    
T  4122213 aacacgtctaatccaaagagt 4122193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 42874502 - 42874566
Alignment:
Q  54 gacacaaacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatca 118  Q
    ||||| |||||||| |||||||||||  ||| | ||||||||||| ||||| || ||||||||||    
T  42874502 gacactaacacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatca 42874566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 99880 - 99955
Alignment:
Q  61 acacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgt 136  Q
    ||||||| | ||||||||| |||||||||| ||||||||||||| || |||||||| || | ||||||||| ||||    
T  99880 acacggacatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgt 99955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 21345597 - 21345535
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgt 131  Q
    ||||| |||||||||||||||||| |||||||||||  | ||||||||||| ||||| |||||    
T  21345597 acgtcaacaccaataataatttgaaaaaataacataactcaatgtaatcatttatgtcggtgt 21345535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 34589790 - 34589718
Alignment:
Q  49 actcagacacaaacacggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatcatgt 121  Q
    ||||||||||  ||||||| || | |||||| |||| ||||||||||||| ||||| || |||||||||||||    
T  34589790 actcagacacggacacggacacattgacaccgataacaatttgagaaaatgacataattcaatgtaatcatgt 34589718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 5225662 - 5225543
Alignment:
Q  84 ataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttagtgtcagacatgatacatatttgacaccggaacacgcctaattca 183  Q
    ||||||||||| ||| ||||| || |||| ||| || | ||| ||||| ||||| ||||| |||| |||||||||  ||| |||| |||||||||||  |    
T  5225662 ataatttgagataatgacataattcaatgcaataatatgtgtcggtgtcgtgttggtgtcggacacgatacatatcggaccccgggacacgcctaatcta 5225563  T
Q  184 aagagtatttgtgcttcata 203  Q
      |||||| |||||||||||    
T  5225562 tggagtatctgtgcttcata 5225543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 5654567 - 5654504
Alignment:
Q  140 tgtcagacatgatacatatttgacaccggaacacgcctaattcaaagagtatttgtgcttcata 203  Q
    |||| |||| ||||| |||  |||||||||| ||||||||| | ||||||||||||||||||||    
T  5654567 tgtcggacacgatacgtatccgacaccggaatacgcctaatccgaagagtatttgtgcttcata 5654504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 15969343 - 15969397
Alignment:
Q  64 cggaaacgtcgacaccaataataatttgagaaaataacatactttaatgtaatca 118  Q
    |||| ||||||||||  |||||||||| | ||||||||||| |||||||||||||    
T  15969343 cggacacgtcgacactgataataattttaaaaaataacataatttaatgtaatca 15969397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 18513300 - 18513238
Alignment:
Q  74 gacaccaataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgt 136  Q
    |||||| |||||||||||||||||| ||||| || ||||||||||| | |||  |||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 2976702 - 2976759
Alignment:
Q  82 taataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgttag 139  Q
    ||||||||||||||||| ||||| || ||||||||||||  |||  ||||||||||||    
T  2976702 taataatttgagaaaatgacataattgaatgtaatcatgcgtgtcagtgttgtgttag 2976759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 7214580 - 7214539
Alignment:
Q  75 acaccaataataatttgagaaaataacatactttaatgtaat 116  Q
    |||||| ||||||||||||||||| ||||| |||||||||||    
T  7214580 acaccactaataatttgagaaaatcacataatttaatgtaat 7214539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 33950144 - 33950181
Alignment:
Q  82 taataatttgagaaaataacatactttaatgtaatcat 119  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcat 33950181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 35212787 - 35212742
Alignment:
Q  73 cgacaccaataataatttgagaaaataacatactttaatgtaatca 118  Q
    |||||||||||||||||||||||||| | ||| || ||||||||||    
T  35212787 cgacaccaataataatttgagaaaattaaataattgaatgtaatca 35212742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 436953 - 437009
Alignment:
Q  76 caccaataataatttgagaaaa-taacatactttaatgtaatcatgtatgttggtgt 131  Q
    |||| ||||||||||||||||| ||||||| || || |||||||||| |||||||||    
T  436953 caccgataataatttgagaaaaataacataattgaaggtaatcatgtgtgttggtgt 437009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 5654653 - 5654605
Alignment:
Q  71 gtcgacaccaataataatttgagaaaataacatactttaatgtaatcat 119  Q
    ||||||||  |||||||||||||||||| ||||| || |||||||||||    
T  5654653 gtcgacactgataataatttgagaaaatgacataattcaatgtaatcat 5654605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 9906780 - 9906836
Alignment:
Q  80 aataataatttgagaaaataacatactttaatgtaatcatgtatgttggtgttgtgt 136  Q
    |||||||||| ||||||||||  || || ||||||||||| ||||||||| ||||||    
T  9906780 aataataattagagaaaataaattaattgaatgtaatcatatatgttggttttgtgt 9906836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 23915127 - 23915159
Alignment:
Q  72 tcgacaccaataataatttgagaaaataacata 104  Q
    |||||||||||||| ||||||||||||||||||    
T  23915127 tcgacaccaataatcatttgagaaaataacata 23915159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 43476794 - 43476846
Alignment:
Q  69 acgtcgacaccaataataattt-gagaaaataacatactttaatgtaatcatg 120  Q
    ||||||||| |||||||||||| |||| ||| ||||| |||||||||||||||    
T  43476794 acgtcgacatcaataataattttgagagaatgacataatttaatgtaatcatg 43476846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 26388 - 26432
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgt 113  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||    
T  26388 acgtcgacaccactaataatttgagaaaatcacataattcaatgt 26432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 18172 - 18124
Alignment:
Q  69 acgtcgacaccaataataatttgagaaaataacatactttaatgtaatc 117  Q
    ||||||||||| |||| | ||||||||||||||||| || |||||||||    
T  18172 acgtcgacaccgataaaattttgagaaaataacataattcaatgtaatc 18124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University