View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8933_low_7 (Length: 378)

Name: NF8933_low_7
Description: NF8933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8933_low_7
NF8933_low_7
[»] chr5 (6 HSPs)
chr5 (16-361)||(43452758-43453103)
chr5 (16-353)||(17221345-17221682)
chr5 (129-211)||(38365154-38365236)
chr5 (129-181)||(20820955-20821007)
chr5 (129-181)||(20828055-20828107)
chr5 (255-309)||(10015171-10015225)
[»] chr8 (9 HSPs)
chr8 (16-353)||(8269273-8269610)
chr8 (20-349)||(14090001-14090329)
chr8 (31-191)||(5343617-5343777)
chr8 (24-211)||(34661866-34662053)
chr8 (24-211)||(43095852-43096038)
chr8 (111-191)||(1347560-1347640)
chr8 (129-211)||(36832134-36832216)
chr8 (147-211)||(42278014-42278078)
chr8 (117-175)||(45054122-45054180)
[»] chr7 (10 HSPs)
chr7 (16-355)||(28244575-28244914)
chr7 (24-180)||(46271348-46271504)
chr7 (24-211)||(39973739-39973926)
chr7 (129-210)||(47247989-47248070)
chr7 (236-307)||(20216166-20216236)
chr7 (24-211)||(20218915-20219102)
chr7 (129-180)||(14964920-14964971)
chr7 (129-180)||(15394392-15394443)
chr7 (24-210)||(30712465-30712651)
chr7 (111-180)||(28769246-28769315)
[»] chr4 (9 HSPs)
chr4 (20-354)||(42458743-42459077)
chr4 (8-145)||(901914-902051)
chr4 (256-355)||(901756-901855)
chr4 (24-180)||(3426969-3427125)
chr4 (129-211)||(30844628-30844710)
chr4 (119-188)||(7033349-7033418)
chr4 (24-75)||(26937797-26937848)
chr4 (129-191)||(26937681-26937743)
chr4 (255-295)||(33319158-33319198)
[»] chr6 (2 HSPs)
chr6 (16-352)||(25062066-25062402)
chr6 (20-302)||(13682265-13682547)
[»] chr3 (5 HSPs)
chr3 (20-307)||(27991280-27991564)
chr3 (82-319)||(54454977-54455211)
chr3 (129-211)||(39348330-39348412)
chr3 (148-211)||(42723214-42723277)
chr3 (129-191)||(8614803-8614865)
[»] chr2 (2 HSPs)
chr2 (24-211)||(3408063-3408250)
chr2 (243-304)||(15343207-15343268)
[»] chr1 (7 HSPs)
chr1 (128-211)||(43628024-43628107)
chr1 (111-180)||(17999271-17999340)
chr1 (129-211)||(35065923-35066005)
chr1 (129-211)||(28793408-28793490)
chr1 (129-211)||(32297729-32297811)
chr1 (129-211)||(42096783-42096865)
chr1 (132-180)||(10886033-10886081)
[»] scaffold0035 (1 HSPs)
scaffold0035 (238-296)||(17631-17689)
[»] scaffold1494 (1 HSPs)
scaffold1494 (129-191)||(844-906)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 43452758 - 43453103
Alignment:
Q  16 catggttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacatt 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  43452758 catggttaagctccctatacaagtgagatagtgccgcagctcccaatgaaaaaccagcaataacctccaggtctctaaagtacctcagatagacaacatt 43452857  T
Q  116 cacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctcctcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  43452858 cacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagcttggtccgacaacttctgcacctcctcctcc 43452957  T
Q  216 atacgaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtctcattca 315  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43452958 atacgaccttcattatcagcctcaaattgctgcaaaagacgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtctcattca 43453057  T
Q  316 cctcatcaagagcatctcccggagaagaccccaaataccttatctt 361  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  43453058 ccccatcaagagcatctcccggagaagaccccaaataccttatctt 43453103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 17221345 - 17221682
Alignment:
Q  16 catggttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacatt 115  Q
    |||||||||| |||||||||| ||||||||||| || ||||||| ||||||||| |  || |||||  |||||| |  ||||| |||||||||||||||     
T  17221345 catggttaagttccctatacaagtgagatagtgtcgtagctccccatgaaaaacaagaaacaacctaaaggtctttgaagtacgtcagatagacaacatc 17221444  T
Q  116 cacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctcctcc 215  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||  |||| |||||||||||||||||    
T  17221445 cacataggtgacactcctgtaagtgaagagtgtgatccccaccaagtacatcaaatatatgtgaagagtctggtcccgcaacctctgcacctcctcctcc 17221544  T
Q  216 atacgaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtctcattca 315  Q
    |||| ||| ||||||||   |||||| | |  |||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||    
T  17221545 ataccaccctcattatctaactccaactacaacaaaagacgctccttgaaaatcttcctcaagaagctaaaccgtgcatgtgcacctttggtctcattca 17221644  T
Q  316 cctcatcaagagcatctcccggagaagaccccaaatac 353  Q
    ||||||||| |||| ||   |||||| |||||||||||    
T  17221645 cctcatcaaaagcaacttgtggagaataccccaaatac 17221682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 38365236 - 38365154
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    |||||||||||||| |   |||||||||||||||| | |||||||||||||| || ||||||| | ||| ||| |||||||||    
T  38365236 ctcttgtcagtgaatatcttgatccccaccaagtatagcaaatatatgcggacagcctggtcccataacctctccacctcctc 38365154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 20820955 - 20821007
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggag 181  Q
    |||||||||||||| |  ||||||||||||||||| | |||||||||||||||    
T  20820955 ctcttgtcagtgaatatcgtgatccccaccaagtatagcaaatatatgcggag 20821007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 20828055 - 20828107
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggag 181  Q
    |||||||||||||| |  ||||||||||||||||| | |||||||||||||||    
T  20828055 ctcttgtcagtgaatatcgtgatccccaccaagtatagcaaatatatgcggag 20828107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 10015225 - 10015171
Alignment:
Q  255 cgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtct 309  Q
    ||||||||||| ||||||  |||||||||||||||   |||||||||||||||||    
T  10015225 cgctccttgaagatcctctccaagtagctaaatcggcaatgtgcacctttggtct 10015171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 8269610 - 8269273
Alignment:
Q  16 catggttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacatt 115  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||| | ||| ||||||||| ||||||||  |||||| |||||||||||||||||||||     
T  8269610 catggttaagctccctatacaagtgtgatagtgcagcagctcccgacgaataaccaacaacaacctccaattctctaaagtacctcagatagacaacatc 8269511  T
Q  116 cacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctcctcc 215  Q
    ||||||||||   |||||||||||||| |  |||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |    
T  8269510 cacataggtggtgctcttgtcagtgaataacgtgatccccaccaagtacatcaaatatatgcggagagtttggtcccacaacttttgcacctcctccttc 8269411  T
Q  216 atacgaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtctcattca 315  Q
    |||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||    
T  8269410 ataccaccctcattatcagcctccaagtgctgcaaaaggcgccccttgaaaatccttctcaagtagctaaattgtgcatgtgcacctctagtctcattca 8269311  T
Q  316 cctcatcaagagcatctcccggagaagaccccaaatac 353  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8269310 cctcatcaagagcatcttccggagaagaccccaaatac 8269273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 349
Target Start/End: Original strand, 14090001 - 14090329
Alignment:
Q  20 gttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcaca 119  Q
    ||||||||||||||||| ||||| |||||||||| ||||| |||||||   | ||| ||| || ||||||||| |||||||||| ||||||| || ||||    
T  14090001 gttaagctccctatacaagtgagctagtgccgcatctccccatgaaaatgaagcaacaacatcaaggtctctaaagtacctcaggtagacaa-atccaca 14090099  T
Q  120 taggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctcctccatac 219  Q
    |  ||    | ||||| || |||||||||||||||||||||||| | |||||||||||||| || ||||| |  |||| ||  ||||||||    || ||    
T  14090100 tcagtttggcccttgttagcgaagagtgtgatccccaccaagtatagcaaatatatgcggacagcctggttctgcaacctccacacctcctgagtcacac 14090199  T
Q  220 gaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtctcattcacctc 319  Q
     |   ||||| ||   | |||| | |||||| ||  ||||||||||||||||||||||||||||||||||   |||||||||| ||||   | |||||||    
T  14090200 tatgctcattctccaacgccaactactgcaacagaagctccttgaaaatcctcctcaagtagctaaatcggcaatgtgcacctctggtacgagtcacctc 14090299  T
Q  320 atcaagagcatctcccggagaagaccccaa 349  Q
    |  ||||||||| ||||||  |||||||||    
T  14090300 aagaagagcatcacccggatcagaccccaa 14090329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 191
Target Start/End: Complemental strand, 5343777 - 5343617
Alignment:
Q  31 tatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcacataggtgacact 130  Q
    |||||| ||||| |||||||||||||||| |||||||||||  || ||  || ||||||||  ||||| |||| || ||||||| ||||         ||    
T  5343777 tatacaagtgagctagtgccgcagctccccatgaaaaaccagaaacaagatcgaggtctctgaagtacttcaggtatacaacatccacagcccactagct 5343678  T
Q  131 cttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtcc 191  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||    
T  5343677 cttgtcagtgaagattgtgatccccaccaagtacaacaaatatatgcggacagcctggtcc 5343617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 34661866 - 34662053
Alignment:
Q  24 agctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcacatagg 123  Q
    |||||| |||||| ||||| |||||| ||| ||||| |||||||||||  || ||  || ||||||||| ||||| |||| || ||||||| ||  |||     
T  34661866 agctccttatacaagtgagctagtgctgcaactccccatgaaaaaccagaaacaagatcgaggtctctaaagtacttcaggtacacaacatcca--tagc 34661963  T
Q  124 tgaca--ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
      ||   |||||||||||||||| |||||| ||||||||||||| |||||||||||||| || |||||||  |||| ||| |||||||||    
T  34661964 ccactagctcttgtcagtgaagattgtgattcccaccaagtacaacaaatatatgcggacagcctggtcccgcaacctctccacctcctc 34662053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 43096038 - 43095852
Alignment:
Q  24 agctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcacatagg 123  Q
    |||||| |||||| ||||| |||||||||||||||| |||||||||||  || ||  || ||||||||| |||||  ||| || ||||||| |||| |      
T  43096038 agctccttatacaagtgagctagtgccgcagctccccatgaaaaaccagaaacaagatcgaggtctctaaagtactgcaggtacacaacatccaca-acc 43095940  T
Q  124 tgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
         ||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  |||||||  |||| ||| |||||||||    
T  43095939 cactgctcttgtcagtgaagatcgtgatccccaccaagtacaacaaatatatgcgaacaacctggtcctgcaacctctccacctcctc 43095852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 1347560 - 1347640
Alignment:
Q  111 acattcacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtcc 191  Q
    |||| |||||||||| ||||||||||||||||||| ||||| ||||||||||| |  |||| |||||| |||| |||||||    
T  1347560 acatccacataggtggcactcttgtcagtgaagagcgtgatacccaccaagtagagaaaatttatgcgaagagactggtcc 1347640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 36832216 - 36832134
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    ||||||||||||||||  |||||||| |||||||| | |||||||||||||| |  |||||||  |||| ||| |||||||||    
T  36832216 ctcttgtcagtgaagatcgtgatcccaaccaagtatagcaaatatatgcggacaacctggtcccgcaacctctccacctcctc 36832134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 42278078 - 42278014
Alignment:
Q  147 gtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    ||||||||||||||||| | |||||||||||||| | ||||||||  |||| |||| ||||||||    
T  42278078 gtgatccccaccaagtatagcaaatatatgcggacaatctggtcccgcaacctctgtacctcctc 42278014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 45054122 - 45054180
Alignment:
Q  117 acataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatat 175  Q
    ||||||||| | ||||||||||| ||||| ||||| ||||||||||||| || ||||||    
T  45054122 acataggtggcgctcttgtcagtaaagagagtgatgcccaccaagtacaacatatatat 45054180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 28244914 - 28244575
Alignment:
Q  16 catggttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacatt 115  Q
    |||||||||||||| |||| |  | | |||||  |||||||||| ||||||||||| ||| |||||| ||||||||  |||||||||||| ||||||||     
T  28244914 catggttaagctccatataaaaatcatatagtctcgcagctccccatgaaaaaccagcaacaacctctaggtctctgaagtacctcagatggacaacatc 28244815  T
Q  116 cacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctcctcc 215  Q
    |||||||||| | |||||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||  |||| |||| ||| ||||||||    
T  28244814 cacataggtggcgctcttgtcggtgaagagcgtgatccctatcaagtacatcaaatatatgcggagagtctggtcccgcaacctctgaaccacctcctcc 28244715  T
Q  216 atacgaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtctcattca 315  Q
    |||| ||| ||||||||   |||||||||| ||||||| ||| ||||||||||| |||| ||||||||||  ||||||||||||||| |||||| |||||    
T  28244714 ataccaccctcattatctaactccaattgcagcaaaagacgcaccttgaaaatcttccttaagtagctaagccgtgcatgtgcacctctggtcttattca 28244615  T
Q  316 cctcatcaagagcatctcccggagaagaccccaaatacct 355  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  28244614 cctcatcaagagcatctcccagagaagaccccaaatacct 28244575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 46271348 - 46271504
Alignment:
Q  24 agctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcacatagg 123  Q
    |||||| |||||| ||||| |||||||||||||||| |||||||||||  || ||  || ||||||||| ||||| |||| || ||||||| ||  |||     
T  46271348 agctccttatacaagtgagctagtgccgcagctccccatgaaaaaccagaaacaagatcgaggtctctaaagtacttcaggtacacaacatcca--tagc 46271445  T
Q  124 tgac--actcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcgga 180  Q
      ||  |||||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  46271446 ccactgactcttgtcagtgaagatcgtgatccccaccaagtacaacaaatatatgcgga 46271504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 39973926 - 39973739
Alignment:
Q  24 agctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcacatagg 123  Q
    |||||| |||||| ||||| |||||||||| ||| | |||||||||||  || ||  || ||||||||| ||||| |||| || ||||||| ||||        
T  39973926 agctccttatacaagtgagctagtgccgcaactctccatgaaaaaccagaaacaaaatcgaggtctctaaagtacttcaggtacacaacatccacaaccc 39973827  T
Q  124 tgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
        |||||||||||||||||  ||||| | ||||||||||| |||||||||||||| | ||||||||  |||| ||| |||||||||    
T  39973826 actgactcttgtcagtgaagatcgtgatactcaccaagtacaacaaatatatgcggacaatctggtcccgcaacctctccacctcctc 39973739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 47248070 - 47247989
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcct 210  Q
    ||||||| ||||||||  ||||||||||||||||||| ||||||||||| || || |||||||| |||| ||| ||||||||    
T  47248070 ctcttgttagtgaagatcgtgatccccaccaagtacagcaaatatatgcagacagcctggtccggcaacctctccacctcct 47247989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 20216166 - 20216236
Alignment:
Q  236 ctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggt 307  Q
    |||||| |||||||| || || ||||||||||||||||||||||||||||||||   |||||||||||||||    
T  20216166 ctccaactgctgcaatagacg-tccttgaaaatcctcctcaagtagctaaatcggcaatgtgcacctttggt 20216236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 20218915 - 20219102
Alignment:
Q  24 agctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcacatagg 123  Q
    |||||| |||||| ||||| |||||||||||||||| |||||||||||  || ||  || |||| |||| ||||| |||| || ||||||| ||  |||     
T  20218915 agctccttatacaagtgagctagtgccgcagctccccatgaaaaaccagaaacaagatcgaggtttctaaagtacttcaggtacacaacatcca--tagc 20219012  T
Q  124 tgaca--ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
      ||   ||||||| ||||||||  |||||||||||||||||||  ||||||||||||| |  |||||||  |||| ||| |||||||||    
T  20219013 ccactggctcttgttagtgaagatcgtgatccccaccaagtacagtaaatatatgcggacaacctggtcccgcaacctctccacctcctc 20219102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 14964971 - 14964920
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcgga 180  Q
    ||||||||||||||||  |||||||||||||||||||  |||||||||||||    
T  14964971 ctcttgtcagtgaagatcgtgatccccaccaagtacagaaaatatatgcgga 14964920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 15394443 - 15394392
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcgga 180  Q
    ||||||||||||||||  |||||||||||||||||||  |||||||||||||    
T  15394443 ctcttgtcagtgaagatcgtgatccccaccaagtacagaaaatatatgcgga 15394392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 30712465 - 30712651
Alignment:
Q  24 agctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcacatagg 123  Q
    |||||| |||||| ||||| |||||||||||||||| |||||||||||  || ||  |  ||||||||| ||||| |||| || ||||||| ||||        
T  30712465 agctccttatacaagtgagctagtgccgcagctccccatgaaaaaccagaaacaagattgaggtctctaaagtacttcaggtacacaacatccacagccc 30712564  T
Q  124 tgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcct 210  Q
         ||||||||||||||||  ||||| |||| |||||||| |||||||||| ||| | | ||||||  |||| ||| ||||||||    
T  30712565 actggctcttgtcagtgaagatcgtgattcccatcaagtacaacaaatatatgtggacaatatggtcccgcaacctctccacctcct 30712651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 28769315 - 28769246
Alignment:
Q  111 acattcacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcgga 180  Q
    |||| |||||||||| | |||||||||||||||||  |||| |||| |||||| | ||||||||||||||    
T  28769315 acatccacataggtggcgctcttgtcagtgaagagcatgatacccatcaagtatagcaaatatatgcgga 28769246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 42458743 - 42459077
Alignment:
Q  20 gttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcaca 119  Q
    ||||| ||||||||||| ||| ||| |||| ||| ||||| ||||| ||||| ||| |||||||||||||||  |||||||||||||||||| || ||||    
T  42458743 gttaaactccctatacaagtgtgattgtgcagcaactccccatgaataaccagcaacaacctccaggtctctgaagtacctcagatagacaatatccaca 42458842  T
Q  120 taggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctcctccatac 219  Q
    |||||  || |||||||| ||||||  ||||||||||||||||||| |||||||||||||||||  ||  ||  ||| || |||||||| |||||||||     
T  42458843 taggtagcattcttgtcaatgaagatagtgatccccaccaagtacaacaaatatatgcggagagcatgcgccctcaaattatgcacctcatcctccatat 42458942  T
Q  220 gaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtctcattcacctc 319  Q
     ||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| | |||||||||||||  | | |||||||||||    
T  42458943 caccctcattatcagcctccaactgctgcaaaagactctccttgaaaatcctcctcaagtagctaaaccatgcatgtgcacctccgatgtcattcacctc 42459042  T
Q  320 atcaagagcatctcccggagaagaccccaaatacc 354  Q
     | |||||||| |||||||||| ||||||||||||    
T  42459043 cttaagagcatatcccggagaaaaccccaaatacc 42459077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 902051 - 901914
Alignment:
Q  8 atggacatcatggttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatag 107  Q
    |||| |||||||||||||||| || |||| | |||||||||||||||||||| ||||||||||| ||||||||||||  |||||| ||||||| ||||||    
T  902051 atgggcatcatggttaagctcgctttacaagcgagatagtgccgcagctccccatgaaaaaccagcaataacctccatatctctaaagtaccttagatag 901952  T
Q  108 acaacattcacataggtgacactcttgtcagtgaagag 145  Q
    ||||||| |||||||||| | |||||||||||||||||    
T  901951 acaacatccacataggtggcgctcttgtcagtgaagag 901914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 901855 - 901756
Alignment:
Q  256 gctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtctcattcacctcatcaagagcatctcccggagaagaccccaaatacct 355  Q
    |||| ||||||||| |||||||||||||||| ||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||    
T  901855 gctctttgaaaatcttcctcaagtagctaaaccgtgcatatccacctttggtctcattcgcctcgtcaagagcatctcccggagaagaccctaaatacct 901756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 3426969 - 3427125
Alignment:
Q  24 agctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcacatagg 123  Q
    ||||||||||||| ||||| |||||||||| ||||| ||||| ||||| ||| ||  || ||||||||| |||||||||| |||||||||| ||||        
T  3426969 agctccctatacaagtgagctagtgccgcaactccccatgaataaccagcaacaagatcaaggtctctaaagtacctcaggtagacaacatccacaaccc 3427068  T
Q  124 tgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcgga 180  Q
         ||||||||||||||||  ||||||||||| ||||| | ||||||||||||||    
T  3427069 actggctcttgtcagtgaagatcgtgatccccacaaagtataacaaatatatgcgga 3427125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 30844628 - 30844710
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    |||||||||||||| |  ||||||||||||||||| | |||||||||||||| ||| ||||||  |||| ||| |||||||||    
T  30844628 ctcttgtcagtgaatatcgtgatccccaccaagtataacaaatatatgcggacagtttggtcctgcaacctctccacctcctc 30844710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 7033418 - 7033349
Alignment:
Q  119 ataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctgg 188  Q
    ||||||| ||||||||| |||||| |||||||| || |||||||| | ||||||||||||||||| ||||    
T  7033418 ataggtggcactcttgttagtgaatagtgtgatacctaccaagtagagcaaatatatgcggagagactgg 7033349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 26937848 - 26937797
Alignment:
Q  24 agctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaa 75  Q
    |||||| |||||| ||||| |||||||||||||||| ||||| |||||||||    
T  26937848 agctccttatacaagtgagctagtgccgcagctccccatgaataaccaacaa 26937797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 26937743 - 26937681
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtcc 191  Q
    ||||| |||||||| |  ||||||||||||||||| | |||||||||||||| || |||||||    
T  26937743 ctcttatcagtgaatatcgtgatccccaccaagtatagcaaatatatgcggacagcctggtcc 26937681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 33319158 - 33319198
Alignment:
Q  255 cgctccttgaaaatcctcctcaagtagctaaatcgtgcatg 295  Q
    |||||||||||||| ||| |||| |||||||||||||||||    
T  33319158 cgctccttgaaaattctcttcaaatagctaaatcgtgcatg 33319198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 25062066 - 25062402
Alignment:
Q  16 catggttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacatt 115  Q
    ||||||||||||||||||| | |||||||||   |||| ||||| || ||||||||  || | | | |||||||||  ||||||| ||||| |||||||     
T  25062066 catggttaagctccctatataagtgagataggcacgcaactccccataaaaaaccacaaacagctttcaggtctctgaagtaccttagatatacaacatc 25062165  T
Q  116 cacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctcctcc 215  Q
    ||||||| |  | ||||||||||||||||| |||||||||||||||||||||| |||||||  ||||| |||||||  |||| |||||||||||| ||||    
T  25062166 cacatagttagcgctcttgtcagtgaagagcgtgatccccaccaagtacatcagatatatgtagagagcctggtcccgcaacctctgcacctccttctcc 25062265  T
Q  216 atacgaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggtctcattca 315  Q
    |||| ||| ||| ||||   | | || ||| |    || | ||||||||||||||||||||||||||||||  |||||||||||||| | |||| | |||    
T  25062266 ataccaccctcaatatctaacactaactgcagttggagacactccttgaaaatcctcctcaagtagctaaacagtgcatgtgcacctctcgtcttagtca 25062365  T
Q  316 cctcatcaagagcatctcccggagaagaccccaaata 352  Q
    ||||||||||||||||||| | |||||||||||||||    
T  25062366 cctcatcaagagcatctccagcagaagaccccaaata 25062402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 13682547 - 13682265
Alignment:
Q  20 gttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcaca 119  Q
    |||||||| |||||| ||||||| |||||||||||||||| ||| |||  || ||| ||| || ||||||||| |||||||||| |||||||||| || |    
T  13682547 gttaagcttcctatagaggtgagctagtgccgcagctccccatgcaaattcagcaacaacatcaaggtctctaaagtacctcaggtagacaacatccata 13682448  T
Q  120 taggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctcctccatac 219  Q
       ||    ||||||||||||||||| |||||||| | |||||| | |||||||||||||| |  ||||||| |||||  | | |||||||    || ||    
T  13682447 gcagtttggctcttgtcagtgaagagagtgatcccgatcaagtataacaaatatatgcggacaacctggtcccacaacccccgtacctcctgagtcacac 13682348  T
Q  220 gaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacct 302  Q
     |   ||||| ||   |||||| ||||||||||| || ||||||||||||||||||||||||||||||||   ||||||||||    
T  13682347 catactcattctccaactccaactgctgcaaaagacgatccttgaaaatcctcctcaagtagctaaatcgacaatgtgcacct 13682265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 27991280 - 27991564
Alignment:
Q  20 gttaagctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcaca 119  Q
    ||||||||| ||||||| ||  || ||||| ||| ||||| ||||| ||||||||| || |||||| |||||| ||||||| |||||  |||||| ||||    
T  27991280 gttaagctctctatacaagtttgaaagtgcagcaactccccatgaataaccaacaacaagctccagatctctaaagtacctgagatatgcaacatccaca 27991379  T
Q  120 taggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctcctccatac 219  Q
    || | | | ||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||  ||  ||  ||||||| |||   |||||||||||     
T  27991380 taagaggcgctcttgtcagtgaagagcgtgatccccacaaagtacatcaactatatgcagagagcatgcgcccgcaacttccgca---cctcctccatat 27991476  T
Q  220 gaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcacctttggt 307  Q
     ||| || || ||||||||||| || || ||||  |||||||||||||||| |||||||||||||||   ||||||||||||||||||    
T  27991477 taccctcgttttcagcctccaactgttgaaaaatacgctccttgaaaatccacctcaagtagctaaaatatgcatgtgcacctttggt 27991564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 319
Target Start/End: Original strand, 54454977 - 54455211
Alignment:
Q  82 ccaggtctctagagtacctcagatagacaacattcacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggag 181  Q
    ||||||||||| ||||| |||||||  |||||| |||||||  | ||||||||||||||||||||||||| ||||||||| | |  ||||||||||||||    
T  54454977 ccaggtctctaaagtacttcagataagcaacatccacatagtaggcactcttgtcagtgaagagtgtgatacccaccaagaagaataaatatatgcggag 54455076  T
Q  182 agtctggtccgacaacttctgcacctcctcctccatacgaccttcattatcagcctccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtag 281  Q
    || ||| |||  |||| || |   | ||    ||| |  ||| ||||| || ||||| |||||||  ||||| |||||| |||||||||||||||| |||    
T  54455077 agcctgctcccgcaacctccg---cgccagaaccacatcaccctcattgtccgcctctaattgctctaaaagacgctccgtgaaaatcctcctcaattag 54455173  T
Q  282 ctaaatcgtgcatgtgcacctttggtctcattcacctc 319  Q
    |||||||| |||||| || | ||||| ||| |||||||    
T  54455174 ctaaatcgagcatgtccatcgttggtgtcagtcacctc 54455211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 39348412 - 39348330
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    |||||||||||||| |  ||||||||||||||||| | |||||||||||||| || |||||||  |||| ||| |||||||||    
T  39348412 ctcttgtcagtgaatatcgtgatccccaccaagtatagcaaatatatgcggacagcctggtcccgcaacctctccacctcctc 39348330  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 42723277 - 42723214
Alignment:
Q  148 tgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    |||||||||||||||| | |||||||||||||| |  ||||||| ||||| |||||||||||||    
T  42723277 tgatccccaccaagtatagcaaatatatgcggacatcctggtcccacaacctctgcacctcctc 42723214  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 8614803 - 8614865
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtcc 191  Q
    ||||||| ||||||||   |||||| ||||||||||| |||||||||||||| || |||||||    
T  8614803 ctcttgttagtgaagatcttgatcctcaccaagtacaacaaatatatgcggacagcctggtcc 8614865  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 3408063 - 3408250
Alignment:
Q  24 agctccctatacaggtgagatagtgccgcagctcccaatgaaaaaccaacaataacctccaggtctctagagtacctcagatagacaacattcacatagg 123  Q
    |||||| ||||||  |||| || ||||||||||||| |||||||||||  || ||  || ||||||||| ||||| |||| || ||||||| ||||   |    
T  3408063 agctccttatacaattgagctaatgccgcagctccccatgaaaaaccagaaacaagatcgaggtctctaaagtacttcaggtacacaacatccaca---g 3408159  T
Q  124 tgacact----cttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    | |||||    ||||||||||||||  ||||||||||||||||||| || ||||||||||| || |||||||  |||| ||| |||||||||    
T  3408160 t-acactggctcttgtcagtgaagatcgtgatccccaccaagtacagcatatatatgcggacagcctggtcccgcaacctctccacctcctc 3408250  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 15343268 - 15343207
Alignment:
Q  243 tgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgtgcaccttt 304  Q
    |||| |||||| |||||||||||||| ||| |||||||| |||||||||||||| |||||||    
T  15343268 tgctccaaaagacgctccttgaaaattctcttcaagtagttaaatcgtgcatgttcaccttt 15343207  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 43628024 - 43628107
Alignment:
Q  128 actcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    |||||||||||||||||  |||||||||||||| |||| |||||||||||||| || |||||||  |||| ||| |||||||||    
T  43628024 actcttgtcagtgaagatcgtgatccccaccaattacaacaaatatatgcggacagcctggtcccgcaacctctccacctcctc 43628107  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 17999271 - 17999340
Alignment:
Q  111 acattcacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcgga 180  Q
    |||| |||||||||| |||||||||||||||||||  |||| |||| |||||| | ||||||||||||||    
T  17999271 acatccacataggtggcactcttgtcagtgaagagcatgatacccatcaagtatagcaaatatatgcgga 17999340  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 35066005 - 35065923
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    |||||||||||||| |  ||||||||||||||||| | |||||||||||||| |  |||||||  |||| ||| |||||||||    
T  35066005 ctcttgtcagtgaatatcgtgatccccaccaagtatagcaaatatatgcggacaacctggtcccgcaacctctccacctcctc 35065923  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 28793408 - 28793490
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    ||||||| |||||| |  ||||||||||||||||| | |||||||||||||| |  |||||||  |||| ||| |||||||||    
T  28793408 ctcttgttagtgaatatcgtgatccccaccaagtatagcaaatatatgcggacaacctggtcccgcaacctctccacctcctc 28793490  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 32297729 - 32297811
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    ||||||| |||||| |  ||||||||||||||||| ||||||||||||  || || |||||||  |||| ||| |||||||||    
T  32297729 ctcttgttagtgaatatcgtgatccccaccaagtatatcaaatatatgttgacagcctggtcccgcaacctctccacctcctc 32297811  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 42096783 - 42096865
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtccgacaacttctgcacctcctc 211  Q
    |||||||||||||| |  ||||||||||||||||| |  ||||||||||||| || ||||||   |||| ||| |||||||||    
T  42096783 ctcttgtcagtgaatatcgtgatccccaccaagtatagaaaatatatgcggacagcctggtctcgcaacctctccacctcctc 42096865  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 10886081 - 10886033
Alignment:
Q  132 ttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcgga 180  Q
    |||||| ||||||  ||||||||||||||||| | ||||||||||||||    
T  10886081 ttgtcactgaagatcgtgatccccaccaagtatagcaaatatatgcgga 10886033  T

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Target: scaffold0035 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 17689 - 17631
Alignment:
Q  238 ccaattgctgcaaaaggcgctccttgaaaatcctcctcaagtagctaaatcgtgcatgt 296  Q
    |||| |||| |||||| |||||||| || |||||||||| |||||||||||||||||||    
T  17689 ccaactgctccaaaagacgctccttaaagatcctcctcacgtagctaaatcgtgcatgt 17631  T

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Target: scaffold1494 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 844 - 906
Alignment:
Q  129 ctcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagtctggtcc 191  Q
    ||||||| ||||||||   |||||| ||||||||||| |||||||||||||| || |||||||    
T  844 ctcttgttagtgaagatcttgatcctcaccaagtacaacaaatatatgcggacagcctggtcc 906  T

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