View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8933_low_8 (Length: 370)

Name: NF8933_low_8
Description: NF8933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8933_low_8
NF8933_low_8
[»] chr3 (19 HSPs)
chr3 (66-352)||(45235865-45236156)
chr3 (284-355)||(45234422-45234493)
chr3 (284-353)||(50615592-50615661)
chr3 (284-355)||(32942694-32942766)
chr3 (271-353)||(117952-118035)
chr3 (284-353)||(116629-116699)
chr3 (301-363)||(19669420-19669482)
chr3 (299-353)||(37180084-37180138)
chr3 (284-353)||(54185307-54185377)
chr3 (299-352)||(53439044-53439097)
chr3 (299-361)||(19831125-19831187)
chr3 (284-352)||(44558087-44558156)
chr3 (285-353)||(50614252-50614321)
chr3 (299-355)||(37178660-37178716)
chr3 (284-355)||(54185842-54185914)
chr3 (284-353)||(32944126-32944196)
chr3 (284-352)||(32146705-32146774)
chr3 (284-352)||(32148119-32148188)
chr3 (312-352)||(44555101-44555141)
[»] chr2 (15 HSPs)
chr2 (71-209)||(7824464-7824594)
chr2 (284-353)||(44494019-44494089)
chr2 (284-352)||(1373721-1373789)
chr2 (272-355)||(33001379-33001463)
chr2 (284-353)||(23787326-23787396)
chr2 (284-353)||(18673331-18673402)
chr2 (284-353)||(1373270-1373340)
chr2 (284-353)||(20721067-20721137)
chr2 (299-355)||(20719554-20719610)
chr2 (289-353)||(42486765-42486828)
chr2 (284-353)||(20721740-20721810)
chr2 (284-353)||(43931846-43931916)
chr2 (284-352)||(3104697-3104766)
chr2 (292-353)||(33000686-33000747)
chr2 (284-355)||(44492587-44492659)
[»] chr1 (15 HSPs)
chr1 (284-355)||(33709463-33709535)
chr1 (284-363)||(37985915-37985994)
chr1 (284-355)||(36368411-36368483)
chr1 (284-353)||(12368730-12368800)
chr1 (284-353)||(37987213-37987283)
chr1 (284-356)||(11999421-11999494)
chr1 (284-355)||(534130-534202)
chr1 (284-363)||(29232154-29232234)
chr1 (284-353)||(36248039-36248109)
chr1 (284-352)||(36362184-36362253)
chr1 (284-353)||(15053352-15053422)
chr1 (284-353)||(30981456-30981526)
chr1 (284-353)||(33708025-33708095)
chr1 (278-353)||(21795912-21795988)
chr1 (299-351)||(36249380-36249432)
[»] chr6 (10 HSPs)
chr6 (284-353)||(17246600-17246670)
chr6 (284-363)||(22972295-22972375)
chr6 (284-363)||(23816023-23816103)
chr6 (284-353)||(5080027-5080096)
chr6 (284-353)||(7852254-7852324)
chr6 (299-353)||(7855408-7855462)
chr6 (299-353)||(15119360-15119414)
chr6 (299-352)||(22971615-22971668)
chr6 (299-352)||(23816730-23816783)
chr6 (299-351)||(3335689-3335741)
[»] chr5 (17 HSPs)
chr5 (284-355)||(18951161-18951233)
chr5 (272-355)||(38693956-38694040)
chr5 (284-353)||(13921172-13921242)
chr5 (284-353)||(23318055-23318125)
chr5 (284-353)||(26866197-26866267)
chr5 (284-353)||(41140140-41140210)
chr5 (284-353)||(23312663-23312733)
chr5 (284-353)||(26864937-26865007)
chr5 (284-353)||(34527620-34527690)
chr5 (284-353)||(38691694-38691764)
chr5 (284-353)||(41138732-41138802)
chr5 (272-353)||(43439943-43440025)
chr5 (284-353)||(28381332-28381402)
chr5 (284-353)||(34526728-34526798)
chr5 (298-363)||(13919781-13919846)
chr5 (272-353)||(19116853-19116934)
chr5 (290-353)||(43441380-43441444)
[»] scaffold0651 (2 HSPs)
scaffold0651 (284-353)||(5526-5596)
scaffold0651 (284-361)||(7375-7453)
[»] scaffold0093 (1 HSPs)
scaffold0093 (284-353)||(49275-49345)
[»] chr8 (20 HSPs)
chr8 (284-353)||(1692592-1692662)
chr8 (284-353)||(21136460-21136530)
chr8 (284-355)||(13324068-13324140)
chr8 (299-355)||(24451200-24451256)
chr8 (284-353)||(13322890-13322960)
chr8 (299-353)||(39338038-39338092)
chr8 (298-363)||(16478613-16478678)
chr8 (268-363)||(35368876-35368973)
chr8 (284-355)||(21575514-21575586)
chr8 (284-355)||(37707240-37707312)
chr8 (299-354)||(16472712-16472767)
chr8 (299-354)||(16477283-16477338)
chr8 (299-353)||(24452619-24452673)
chr8 (284-353)||(36062507-36062577)
chr8 (284-353)||(37705840-37705910)
chr8 (269-353)||(42816007-42816092)
chr8 (299-355)||(21135042-21135098)
chr8 (299-353)||(35864179-35864233)
chr8 (284-353)||(39336720-39336790)
chr8 (299-352)||(42817227-42817280)
[»] chr7 (19 HSPs)
chr7 (284-353)||(38198768-38198838)
chr7 (284-353)||(43084357-43084427)
chr7 (284-353)||(43083035-43083104)
chr7 (284-355)||(46044811-46044883)
chr7 (284-353)||(46331886-46331955)
chr7 (284-355)||(33624491-33624563)
chr7 (270-353)||(46043359-46043443)
chr7 (284-353)||(3495365-3495434)
chr7 (284-353)||(15131848-15131918)
chr7 (284-353)||(45957812-45957882)
chr7 (284-352)||(43831969-43832038)
chr7 (284-352)||(44166849-44166918)
chr7 (303-352)||(46330522-46330571)
chr7 (284-363)||(45959169-45959249)
chr7 (284-353)||(33625925-33625995)
chr7 (299-363)||(37107378-37107442)
chr7 (299-355)||(43309633-43309689)
chr7 (323-355)||(43830698-43830730)
chr7 (323-355)||(44168298-44168330)
[»] chr4 (12 HSPs)
chr4 (284-353)||(31318074-31318144)
chr4 (284-353)||(10322837-10322907)
chr4 (284-353)||(25423203-25423273)
chr4 (284-353)||(31470668-31470738)
chr4 (284-355)||(35061332-35061404)
chr4 (284-361)||(31316244-31316322)
chr4 (284-353)||(44208581-44208651)
chr4 (299-355)||(53572043-53572099)
chr4 (284-353)||(33688381-33688451)
chr4 (299-353)||(45046733-45046787)
chr4 (284-351)||(40170077-40170145)
chr4 (299-355)||(44210001-44210057)
[»] scaffold0385 (1 HSPs)
scaffold0385 (284-353)||(10469-10539)
[»] scaffold0097 (2 HSPs)
scaffold0097 (299-355)||(23392-23448)
scaffold0097 (284-353)||(25569-25639)
[»] scaffold0148 (1 HSPs)
scaffold0148 (284-355)||(38897-38969)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 66 - 352
Target Start/End: Complemental strand, 45236156 - 45235865
Alignment:
Q  66 aagatgaagaatgcgtccgccattgatgaagcttcgaaatcaaaatcaaaaccgattaaaatgataaagaaaaagtttgaatctgaagaattcttctatt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45236156 aagatgaagaatgcgtccgccattgatgaagcttcgaaatcaaaatcaaaaccgattaaaatgataaagaaaaagtttgaatctgaagaattcttcaatt 45236057  T
Q  166 tctatgtcactctataacaaaactgttattgtcgtttgtgtaagctgaagtgctctcttgctatatggcgggacaggaa-acctgattacta-cttgt-- 261  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  ||  || ||  ||||      
T  45236056 tctatgtcactctgtaacaaaattgttattgtcgtttgtgtaagctgaagtgctctcttgctatatggcgggacagaaacaaatgtatagtatattgtaa 45235957  T
Q  262 gcatcaatttaaaaaaggtaatttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
      ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||| |||| | || ||||||||||||||||||||    
T  45235956 aaatcaatttaaaaaagataaattatgttttaggtacttataaataggcgtgtttttaatattagttcttacttaaattttattaaattttt 45235865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 45234422 - 45234493
Alignment:
Q  284 ttatgttttaggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||||| |||||||||| | ||||| || | ||||||||| |||||||||||||||||||||||    
T  45234422 ttatgttttaggtcctataaataggtgcgtttccaacattagtccctacttaaattttattaaatttttgat 45234493  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 50615661 - 50615592
Alignment:
Q  284 ttatgttttaggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||||||||||||||| |||||||| | |||||| || ||| ||| |||||||||||||    
T  50615661 ttatgttttaggtcttataaataggcgcgtttctaacattagtccttacttacattctattaaatttttg 50615592  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 32942694 - 32942766
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||||||||  |||||| |||| ||||||||| | ||||||||| |||||||||||||||||||||||    
T  32942694 ttatgttttaggtccctataaagaggcatgtttctaacattagtccctacttaaattttattaaatttttgat 32942766  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 118035 - 117952
Alignment:
Q  271 taaaaaaggtaatttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||| ||| | ||||||||||||||  |||||||||||||||||| || | ||||| ||| |||||||||||||||||||||    
T  118035 taaaaagggttaattatgttttaggtccctataaataggcgtgtttccaacattagtctctacttaaattttattaaatttttg 117952  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 116629 - 116699
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||| ||||||||| || | ||||||||| |||||||||||||||||||||    
T  116629 ttatgttttaggtccctataaataagcgtgtttccaacattagtccctacttaaattttattaaatttttg 116699  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 19669420 - 19669482
Alignment:
Q  301 taaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    |||||||||| ||||| || | ||||||||| ||||||||||||||||||||||| |||||||    
T  19669420 taaataggcgcgtttccaacattagtccctacttaaattttattaaatttttgatctccaacg 19669482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 37180138 - 37180084
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||||||| || | ||||||||| |||||||||||||||||||||    
T  37180138 tataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttg 37180084  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 54185307 - 54185377
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||| ||||||||||||| ||||| || | |||| |||| |||||||||||||||||||||    
T  54185307 ttatgttttaggtccttataaataggcgcgtttccaacattagttcctacttaaattttattaaatttttg 54185377  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 53439044 - 53439097
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    ||||||||||||||||||||| | |||| |||| ||||||||||||||||||||    
T  53439044 tataaataggcgtgtttctaacattagttcctacttaaattttattaaattttt 53439097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 19831187 - 19831125
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaa 361  Q
    |||||||| | ||||||| || | ||||||||| ||||||||||||||||||||| |||||||    
T  19831187 tataaataagtgtgtttccaacattagtccctacttaaattttattaaatttttggtttccaa 19831125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 44558156 - 44558087
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    ||||||||||||||  ||||||||| || ||||| || | ||||||||| ||||||||||||||||||||    
T  44558156 ttatgttttaggtccctataaatagacgcgtttccaacattagtccctacttaaattttattaaattttt 44558087  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 50614252 - 50614321
Alignment:
Q  285 tatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||| |||| |||||||||||| ||||  || | ||||||||| |||||||||||||||||||||    
T  50614252 tatgttttaagtctctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttttg 50614321  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 37178660 - 37178716
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||||||||| || | || ||| || |||||||||||||||||||||||    
T  37178660 tataaataggcgtgtttccaacattaatccatacttaaattttattaaatttttgat 37178716  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 54185914 - 54185842
Alignment:
Q  284 ttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||| || |||||||||||||||||||  || | || ||| || |||||||||||||||||||||||    
T  54185914 ttatgttttatgttcttataaataggcgtgttttcaacattaatccatacttaaattttattaaatttttgat 54185842  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 32944196 - 32944126
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||  |||| ||| | ||||| ||| |||||||||||||||||||||    
T  32944196 ttatgttttaggtccctataaataggcacgtttttaacattagtctctacttaaattttattaaatttttg 32944126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 32146705 - 32146774
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    ||||||||||||||  ||||||||||||| |||| || | |||| | || ||||||||||||||||||||    
T  32146705 ttatgttttaggtccatataaataggcgtatttccaacattagttcatacttaaattttattaaattttt 32146774  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 32148188 - 32148119
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    ||||||||||||||  ||||||||||||| |||| || | |||| |||  ||||||||||||||||||||    
T  32148188 ttatgttttaggtccctataaataggcgtatttccaacattagttcctgtttaaattttattaaattttt 32148119  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 44555101 - 44555141
Alignment:
Q  312 gtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    |||||||| | ||||||||| ||||||||||||||||||||    
T  44555101 gtttctaacattagtccctacttaaattttattaaattttt 44555141  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 7824594 - 7824464
Alignment:
Q  71 gaagaatgcgtccgccattgatgaagcttcgaaatcaaaatcaaaaccgattaaaatgataaagaaaaagtttgaatctgaagaattcttctatttctat 170  Q
    |||||||||||| ||||||| |||||||||||||||||||||      ||||| || |||||||||||||||||||||||||||||||||| ||||||||    
T  7824594 gaagaatgcgtcggccattgttgaagcttcgaaatcaaaatc------gattataacgataaagaaaaagtttgaatctgaagaattcttcgatttctat 7824501  T
Q  171 gtcactctataacaaaactgttattgtcgtttgtgtaag 209  Q
    ||||  || ||||||||||||||||||  ||||||||||    
T  7824500 gtca--ctgtaacaaaactgttattgttttttgtgtaag 7824464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 44494089 - 44494019
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||| |||||||| |||||||||| || | ||||||||| |||||||||||||||||||||    
T  44494089 ttatgttttaggtccttataaattggcgtgtttccaacattagtccctacttaaattttattaaatttttg 44494019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 1373789 - 1373721
Alignment:
Q  284 ttatgttttaggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    |||||||||||||  ||||||||| |||||||| || | ||||||||| ||||||||||||||||||||    
T  1373789 ttatgttttaggttctataaatagacgtgtttccaacattagtccctacttaaattttattaaattttt 1373721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 33001463 - 33001379
Alignment:
Q  272 aaaaaaggtaatttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||| | ||||||||||||||  ||||||||| |||||||| || | ||||||||  |||||||||||||||||||||||    
T  33001463 aaaaaaggttaattatgttttaggtccctataaatagacgtgtttccaacattagtccctgcttaaattttattaaatttttgat 33001379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 23787326 - 23787396
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||| || | ||||||| | |||||||||||||||||||||    
T  23787326 ttatgttttaggtccctataaataggcgtgtttccaacattagtccccacttaaattttattaaatttttg 23787396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 18673402 - 18673331
Alignment:
Q  284 ttatgttttaggtctt--ataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||| ||  ||||||||||||||||| || | || |||||| |||||||||||||||||||||    
T  18673402 ttatgttttaggttttctataaataggcgtgtttccaacattaatccctatttaaattttattaaatttttg 18673331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 1373270 - 1373340
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  ||||||||||| |||||| || | |||||||||  ||||||||||||||||||||    
T  1373270 ttatgttttaggtccctataaataggcatgtttccaacattagtccctacataaattttattaaatttttg 1373340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 20721137 - 20721067
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||   ||||||| | ||||||||| |||||||||||||||||||||    
T  20721137 ttatgttttaggtccctataaataggcacatttctaacattagtccctacttaaattttattaaatttttg 20721067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 20719610 - 20719554
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||| ||||| || | ||||||||| ||||||||||||| |||||||||    
T  20719610 tataaataggcgcgtttccaacattagtccctacttaaattttattacatttttgat 20719554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 42486765 - 42486828
Alignment:
Q  289 ttttaggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||| ||||||||||| ||||| || | |||||| || |||||||||||||||||||||    
T  42486765 ttttaggtct-ataaataggcgcgtttccaacattagtccatacttaaattttattaaatttttg 42486828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 20721810 - 20721740
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| ||||  || | |||||| || |||||||||||||||||||||    
T  20721810 ttatgttttaggtccctataaataggcgcgttttcaacattagtccatacttaaattttattaaatttttg 20721740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 43931846 - 43931916
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||  ||||||  |||| ||||| ||| |||||||||||||||||||||    
T  43931846 ttatgttttaggtccctataaatagcggtgttttcaatattagtctctacttaaattttattaaatttttg 43931916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 3104697 - 3104766
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    ||||||||||||||  |||||||| ||||||||| || | |||| | || ||||||||||||||||||||    
T  3104697 ttatgttttaggtccctataaataagcgtgtttccaacattagttcatacttaaattttattaaattttt 3104766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 33000686 - 33000747
Alignment:
Q  292 taggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||| |||||||||||| ||||| ||   |||| |||| |||||||||||||||||||||    
T  33000686 taggtcctataaataggcgcgtttccaacgttagttcctacttaaattttattaaatttttg 33000747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 44492587 - 44492659
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||||||||  |||||||||||| ||||| || | || ||| || |||||||||||||||||| ||||    
T  44492587 ttatgttttaggtccctataaataggcgcgtttccaacattaatccatacttaaattttattaaatttgtgat 44492659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 33709535 - 33709463
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  33709535 ttatgttttaggtccctataaataggcgtgtttctaatattagtccctacttaaattttattaaatttttgat 33709463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 284 - 363
Target Start/End: Original strand, 37985915 - 37985994
Alignment:
Q  284 ttatgttttaggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    ||||||||||| |||||||||||| |||||||  || | ||||||||| ||||||||||||||||||||||| |||||||    
T  37985915 ttatgttttagatcttataaatagacgtgtttgcaacattagtccctatttaaattttattaaatttttgatctccaacg 37985994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 36368483 - 36368411
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||||| ||||||||||||| ||||| ||   ||||||||| |||||||||||||||||||||||    
T  36368483 ttatgttttaggtccttataaataggcgcgtttccaaccttagtccctacttaaattttattaaatttttgat 36368411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 12368800 - 12368730
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| ||||| || | ||||||||| |||||||||||||||||||||    
T  12368800 ttatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttg 12368730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 37987283 - 37987213
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| ||||| || | ||||||||| |||||||||||||||||||||    
T  37987283 ttatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttg 37987213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 11999421 - 11999494
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatt 356  Q
    ||||||||||||||| ||||||||| | ||||| ||| | ||||||||| ||||||||||||||| ||||||||    
T  11999421 ttatgttttaggtctctataaatagacatgtttttaacattagtccctatttaaattttattaaaattttgatt 11999494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 534202 - 534130
Alignment:
Q  284 ttatgttttaggtctta-taaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||||||||| | |||||||||||||||  || | |||| |||| |||||||||||||||||||||||    
T  534202 ttatgttttaggtctcaataaataggcgtgttttcaacattagttcctatttaaattttattaaatttttgat 534130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 29232234 - 29232154
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    ||||||||||||||  ||||||||||||| |||| || | || |||||| ||||||||||||||||||||| || ||||||    
T  29232234 ttatgttttaggtccctataaataggcgtatttccaacattaatccctacttaaattttattaaatttttggttcccaacg 29232154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 36248039 - 36248109
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  ||||||||| || ||||| || | ||||||||| |||||||||||||||||||||    
T  36248039 ttatgttttaggtccctataaatagacgcgtttccaacattagtccctacttaaattttattaaatttttg 36248109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 36362184 - 36362253
Alignment:
Q  284 ttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    ||||||||||||| ||||||||||||| |||||| || | || |||| | ||||||||||||||||||||    
T  36362184 ttatgttttaggttcttataaataggcatgtttccaacattaatccccatttaaattttattaaattttt 36362253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 15053352 - 15053422
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| ||||  || | ||||||||| |||||||||||||||| ||||    
T  15053352 ttatgttttaggtccctataaataggcgcgttttcaacattagtccctacttaaattttattaaatatttg 15053422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 30981456 - 30981526
Alignment:
Q  284 ttatgttttaggtctt-ataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||   ||| ||||||| ||||| || | ||||||||| |||||||||||||||||||||    
T  30981456 ttatgttttaggtcccgatatataggcgcgtttccaacattagtccctacttaaattttattaaatttttg 30981526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 33708025 - 33708095
Alignment:
Q  284 ttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||| | |||||||||||  ||||| || | |||||| || |||||||||||||||||||||    
T  33708025 ttatgttttaggttcctataaataggcacgtttccaacattagtccatacttaaattttattaaatttttg 33708095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 21795988 - 21795912
Alignment:
Q  278 ggtaatttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||| |||||||| |||||  ||||||||| |||||||  || |  |||||||| |||||||||||||||||||||    
T  21795988 ggtaaattatgtttaaggtccctataaatagacgtgtttacaacatcagtccctacttaaattttattaaatttttg 21795912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 36249432 - 36249380
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttt 351  Q
    |||||||||||| ||||  || | ||||||||| |||||||||||||||||||    
T  36249432 tataaataggcgcgttttcaacattagtccctacttaaattttattaaatttt 36249380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 17246670 - 17246600
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  17246670 ttatgttttaggtctctataaataggcgtgtttctaacaatagtccctacttaaattttattaaatttttg 17246600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 22972375 - 22972295
Alignment:
Q  284 ttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    ||||||||||||| |||||||||||||||||||  |||| ||||||||| ||| ||||||||||||||||| || ||||||    
T  22972375 ttatgttttaggttcttataaataggcgtgttttcaatattagtccctacttatattttattaaatttttggttcccaacg 22972295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 284 - 363
Target Start/End: Original strand, 23816023 - 23816103
Alignment:
Q  284 ttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    ||||||||||||| |||||||||||||||||||  |||| ||||||||| ||| ||||||||||||||||| || ||||||    
T  23816023 ttatgttttaggttcttataaataggcgtgttttcaatattagtccctacttatattttattaaatttttggttcccaacg 23816103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 5080096 - 5080027
Alignment:
Q  284 ttatgttttaggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||| |||||||||  ||||||| |||| |||| |||| |||||||||||||||||||||    
T  5080096 ttatgttttaggtcctataaatagatgtgtttccaatattagttcctatttaaattttattaaatttttg 5080027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 7852254 - 7852324
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||  || | || |||||| |||||||||||||||||||||    
T  7852254 ttatgttttaggtccctataaataggcgtgttttcaacattaatccctacttaaattttattaaatttttg 7852324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 7855462 - 7855408
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||||||  || | ||||||||| |||||||||||||||||||||    
T  7855462 tataaataggcgtgttttcaacattagtccctacttaaattttattaaatttttg 7855408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 15119414 - 15119360
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||| ||||||| || | ||||||||| |||||||||||||||||||||    
T  15119414 tataaataggtgtgtttccaacattagtccctacttaaattttattaaatttttg 15119360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 22971615 - 22971668
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    |||||||||||| ||||| || |  |||||||| ||||||||||||||||||||    
T  22971615 tataaataggcgcgtttccaacatcagtccctacttaaattttattaaattttt 22971668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 23816783 - 23816730
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    |||||||||||| ||||| || |  |||||||| ||||||||||||||||||||    
T  23816783 tataaataggcgcgtttccaacatcagtccctacttaaattttattaaattttt 23816730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 3335741 - 3335689
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttt 351  Q
    |||||||||||||||||| || | || ||||||  ||||||||||||||||||    
T  3335741 tataaataggcgtgtttccaacattactccctacataaattttattaaatttt 3335689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 18951233 - 18951161
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||||| ||||||||| ||||||||| || | ||||||||| |||||||||||||||||||||||    
T  18951233 ttatgttttaggtccttataaataagcgtgtttccaacattagtccctacttaaattttattaaatttttgat 18951161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 38694040 - 38693956
Alignment:
Q  272 aaaaaaggtaatttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||| | ||||||||||||||  |||||||||||||||||| |||| || |||| | |||||||||||||||||||||||    
T  38694040 aaaaaaggttaattatgttttaggtccctataaataggcgtgtttccaatattaatccccacttaaattttattaaatttttgat 38693956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 13921242 - 13921172
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||| ||||||||||||| ||||| || | ||||||||| |||||||||||||||||||||    
T  13921242 ttatgttttaggtccttataaataggcgcgtttccaacattagtccctatttaaattttattaaatttttg 13921172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 23318125 - 23318055
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||| || | ||||||||| |||||||||||||||||||||    
T  23318125 ttatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttg 23318055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 26866267 - 26866197
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||| || | ||||||||| |||||||||||||||||||||    
T  26866267 ttatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttg 26866197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 41140210 - 41140140
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| ||||| || | ||||||||| |||||||||||||||||||||    
T  41140210 ttatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttg 41140140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 23312663 - 23312733
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||| || | || | |||| |||||||||||||||||||||    
T  23312663 ttatgttttaggtccctataaataggcgtgtttccaacattaattcctacttaaattttattaaatttttg 23312733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 26864937 - 26865007
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||| ||| |||||||| | ||||||||| |||||||||||| ||||||||    
T  26864937 ttatgttttaggtccctataaataagcgcgtttctaacattagtccctacttaaattttattcaatttttg 26865007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 34527690 - 34527620
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||| ||| |||||||||||||||||| || | || | |||| |||||||||||||||||||||    
T  34527690 ttatgttttagatctctataaataggcgtgtttccaacattaattcctacttaaattttattaaatttttg 34527620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 38691694 - 38691764
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||| |||| |||||||| ||||||| | || |||||| |||||||||||||||| ||||    
T  38691694 ttatgttttaggtctctatatataggcgtttttctaacattaatccctacttaaattttattaaatatttg 38691764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 41138732 - 41138802
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| || || || | ||||||||| |||||||||||||||||||||    
T  41138732 ttatgttttaggtccctataaataggcgcgtctccaacattagtccctacttaaattttattaaatttttg 41138802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 43439943 - 43440025
Alignment:
Q  272 aaaaaaggtaatttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||| | |||| |||||||||  |||||||||||||||||  || | |||| |||| |||||||||||||||||||||    
T  43439943 aaaaaaggttaattatcttttaggtccctataaataggcgtgttttcaacattagttcctacttaaattttattaaatttttg 43440025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 28381402 - 28381332
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||| ||||||||| ||| |||| ||||| |||||| || |||||||||||  ||||||||    
T  28381402 ttatgttttaggtccttataaatatgcgcgtttttaatattagtccatacttaaattttatataatttttg 28381332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 34526728 - 34526798
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||| || | || |  ||| |||||||||||||||||||||    
T  34526728 ttatgttttaggtccctataaataggcgtgtttccaacattaatttctacttaaattttattaaatttttg 34526798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 13919781 - 13919846
Alignment:
Q  298 ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    ||||||||||||| ||||| ||   |||| || | |||||||||||| ||||||||||||||||||    
T  13919781 ttataaataggcgcgtttccaacgttagttcccacttaaattttattgaatttttgatttccaacg 13919846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 19116853 - 19116934
Alignment:
Q  272 aaaaaaggtaatttatgttttaggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||| | |||||||||| |||   |||||||| |  |||  |||| ||||||||| |||||||||||||||||||||    
T  19116853 aaaaaaggttaattatgttttatgtcccgtaaataggtgcattttcaatattagtccctacttaaattttattaaatttttg 19116934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 43441444 - 43441380
Alignment:
Q  290 tttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||| || ||||||||||||||  || | ||||| ||| |||||||||||||||||||||    
T  43441444 tttaggtctctaaaaataggcgtgttttcaacattagtctctacttaaattttattaaatttttg 43441380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 5526 - 5596
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| |||||||| | ||||||||| |||||||||||||||||||||    
T  5526 ttatgttttaggtccctataaataggcgcgtttctaacattagtccctacttaaattttattaaatttttg 5596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 7453 - 7375
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaa 361  Q
    ||||||||||| || ||||||||||| | ||||| || | ||||||||| |||||||||||||||||||| || |||||    
T  7453 ttatgttttagatccttataaataggtgcgtttccaacattagtccctacttaaattttattaaattttttatctccaa 7375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 49345 - 49275
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||| || | ||||||||| |||||||||||||||||||||    
T  49345 ttatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttg 49275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 1692592 - 1692662
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||| |||||||| |||||||||||||||||  || ||||||||||| |||||||||||||||||||||    
T  1692592 ttatgtattaggtctctataaataggcgtgttttcaacagtagtccctacttaaattttattaaatttttg 1692662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 21136530 - 21136460
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||| || | ||||||||| |||||||||||||||||||||    
T  21136530 ttatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttg 21136460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 13324140 - 13324068
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||||||||  |||||||||||| ||||| || | ||||||||| |||||||||||||||||||||||    
T  13324140 ttatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttgat 13324068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 24451200 - 24451256
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||||||||| || | ||||||||| |||||||||||||||||||||||    
T  24451200 tataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttgat 24451256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 13322890 - 13322960
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  ||||||||||| |||||| || | ||||||||| |||||||||||||||||||||    
T  13322890 ttatgttttaggtccctataaataggcatgtttccaacattagtccctacttaaattttattaaatttttg 13322960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 39338092 - 39338038
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||||||| || | ||||||||| |||||||||||||||||||||    
T  39338092 tataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttg 39338038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 16478678 - 16478613
Alignment:
Q  298 ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    ||||||||||||| |||||||| | ||||||||| ||||||||||||||||| ||| | |||||||    
T  16478678 ttataaataggcgcgtttctaacattagtccctacttaaattttattaaattattggtctccaacg 16478613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 363
Target Start/End: Original strand, 35368876 - 35368973
Alignment:
Q  268 atttaaaaaagg-taatttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    |||||||||||| | | ||||||||||||| | |||||||||||||||||  || | |||| |||| |||||||||||||||||||| || |||||||    
T  35368876 atttaaaaaagggttaattatgttttaggttcctataaataggcgtgttttcaacattagtacctacttaaattttattaaattttttatctccaacg 35368973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 21575514 - 21575586
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||||| |||||||||| || ||||| || | |||| |||| |||||||||||||||||||||||    
T  21575514 ttatgttttaggtccttataaatagacgcgtttccaacattagttcctacttaaattttattaaatttttgat 21575586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 37707312 - 37707240
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||||||||  |||||| ||||| ||||| || | ||||||||| |||||||||||||||||||||||    
T  37707312 ttatgttttaggtccctataaacaggcgcgtttccaacattagtccctacttaaattttattaaatttttgat 37707240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 16472712 - 16472767
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttga 354  Q
    |||||||||||| ||||| || | ||||||||| ||||||||||||||||||||||    
T  16472712 tataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttga 16472767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 16477283 - 16477338
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttga 354  Q
    |||||||||||| ||||| || | ||||||||| ||||||||||||||||||||||    
T  16477283 tataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttga 16477338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 24452673 - 24452619
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||||||| || | ||||||||| |||||||||||||| ||||||    
T  24452673 tataaataggcgtgtttccaacattagtccctacttaaattttattaattttttg 24452619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 36062507 - 36062577
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||| ||||||||||||| ||||  || | ||||| ||| |||||||||||||||||||||    
T  36062507 ttatgttttaggtccttataaataggcgcgttttcaacattagtctctatttaaattttattaaatttttg 36062577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 37705840 - 37705910
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| ||||  || | ||||||||| |||||||||||||||||||||    
T  37705840 ttatgttttaggtccctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttttg 37705910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 42816007 - 42816092
Alignment:
Q  269 tttaaaaaaggtaatttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||| ||| | |||||||| |||||  |||||||| ||||| ||| || | ||||||||| |||||||||||||||||||||    
T  42816007 tttaaaaagggttaattatgtttaaggtccctataaatacgcgtgcttccaacattagtccctacttaaattttattaaatttttg 42816092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 21135042 - 21135098
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||||||||  || | ||||||| | |||||||||||||||||||||||    
T  21135042 tataaataggcgtgttttcaacattagtcccaacttaaattttattaaatttttgat 21135098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 35864233 - 35864179
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||| ||| || ||||| |||| |||| |||||||||||||||||||||    
T  35864233 tataaataggtgtgcttttaatattagttcctacttaaattttattaaatttttg 35864179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 39336720 - 39336790
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  ||||||||||||  |||| || | ||| ||||| |||||||||||||||||||||    
T  39336720 ttatgttttaggtccctataaataggcgcatttccaacattagaccctacttaaattttattaaatttttg 39336790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 42817280 - 42817227
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    |||||||||||||||||| || | ||||||||| ||| ||||||| ||||||||    
T  42817280 tataaataggcgtgtttccaacattagtccctacttatattttatgaaattttt 42817227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 38198768 - 38198838
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||| || | ||||||||| |||||||||||||||||||||    
T  38198768 ttatgttttaggtccctataaataggcgtgtttccaacattagtccctatttaaattttattaaatttttg 38198838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 43084427 - 43084357
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||| |||||||||||||||||| || | |||| |||| |||||||||||||||||||||    
T  43084427 ttatgttttaggtctctataaataggcgtgtttccaacattagttcctacttaaattttattaaatttttg 43084357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 43083035 - 43083104
Alignment:
Q  284 ttatgttttaggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||| ||||||||| ||||||| ||| | ||||| ||| |||||||||||||||||||||    
T  43083035 ttatgttttaggtcctataaatagacgtgtttttaacattagtctctacttaaattttattaaatttttg 43083104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 46044883 - 46044811
Alignment:
Q  284 ttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||||||| |||||||||| ||||||||  || | ||||||||| |||||||||||||||||||||||    
T  46044883 ttatgttttaggttcttataaataagcgtgttttcaacattagtccctacttaaattttattaaatttttgat 46044811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 46331955 - 46331886
Alignment:
Q  284 ttatgttttaggtcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||| ||||||||| | |||||||||| ||||| || | ||||||||| |||||||||||||||||||||    
T  46331955 ttatattttaggtcctgtaaataggcgcgtttccaacattagtccctacttaaattttattaaatttttg 46331886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 355
Target Start/End: Original strand, 33624491 - 33624563
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||||||||  |||||||||||| |||| ||| | |||| |||| |||||||||||||||||||||||    
T  33624491 ttatgttttaggtccctataaataggcgcgtttttaacattagttcctacttaaattttattaaatttttgat 33624563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 46043359 - 46043443
Alignment:
Q  270 ttaaaaaaggtaatttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||| ||| | ||||||||||||| | |||||||| ||| ||||| || | ||||||||| |||||||||||||||||||||    
T  46043359 ttaaaaagggttaattatgttttaggttcctataaatatgcgcgtttccaacattagtccctacttaaattttattaaatttttg 46043443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 3495365 - 3495434
Alignment:
Q  284 ttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||| ||||||||||| || |||| ||| | ||||||||| |||||||||||||||||||||    
T  3495365 ttatgttttaggtgcttataaatagacgcgttt-taacattagtccctacttaaattttattaaatttttg 3495434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 15131918 - 15131848
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||| |||||||| |||||||||  || | |||| |||| |||||||||||||||||||||    
T  15131918 ttatgttttaggtccttataaatcggcgtgttttcaacattagttcctacttaaattttattaaatttttg 15131848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 45957812 - 45957882
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||||||||  || | ||| ||||| |||||||||||||||||||||    
T  45957812 ttatgttttaggtccctataaataggcgtgttttcaacattagcccctacttaaattttattaaatttttg 45957882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 43832038 - 43831969
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    |||||||| |||||| |||||||||||| ||||  || | ||||||||| ||||||||||||||||||||    
T  43832038 ttatgtttaaggtctctataaataggcgcgttttcaacattagtccctacttaaattttattaaattttt 43831969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 44166849 - 44166918
Alignment:
Q  284 ttatgttttaggt-cttataaataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    |||| |||||||| || ||||||||||| |||||||| | || |||||| ||||||||||||||||||||    
T  44166849 ttatattttaggttctaataaataggcgcgtttctaacattaatccctacttaaattttattaaattttt 44166918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 46330522 - 46330571
Alignment:
Q  303 aataggcgtgtttctaatagtagtccctaattaaattttattaaattttt 352  Q
    |||||||||||||| || | ||||||||| ||||||||||||||||||||    
T  46330522 aataggcgtgtttccaacattagtccctacttaaattttattaaattttt 46330571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 45959249 - 45959169
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    ||||||||||||||| ||||||||||   ||||| || | ||||| ||| ||||||||||||||| ||||||| |||||||    
T  45959249 ttatgttttaggtctctataaataggttcgtttccaacattagtctctacttaaattttattaaaattttgatctccaacg 45959169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 33625995 - 33625925
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  ||||||||| |||||||| |  | |||| |||| |||||||||||||||||||||    
T  33625995 ttatgttttaggtccctataaatagacgtgtttccatcattagttcctacttaaattttattaaatttttg 33625925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 37107378 - 37107442
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaacg 363  Q
    |||||||| ||| |||| ||| | | ||||||| |||||||||||||||||||| ||| ||||||    
T  37107378 tataaataagcgagtttttaacattggtccctatttaaattttattaaatttttcattcccaacg 37107442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 43309689 - 43309633
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||||||||  || | || || ||| |||||||||||||||||||||||    
T  43309689 tataaataggcgtgttttcaacattaatctctacttaaattttattaaatttttgat 43309633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 43830698 - 43830730
Alignment:
Q  323 tagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||| |||||||||||||||||||||||    
T  43830698 tagtccctacttaaattttattaaatttttgat 43830730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 44168330 - 44168298
Alignment:
Q  323 tagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||| |||||||||||||||||||||||    
T  44168330 tagtccctacttaaattttattaaatttttgat 44168298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 31318144 - 31318074
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| |||||||| | ||||||||| |||||||||||||||||||||    
T  31318144 ttatgttttaggtccctataaataggcgcgtttctaacattagtccctacttaaattttattaaatttttg 31318074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 10322907 - 10322837
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| ||||| || | ||||||||| |||||||||||||||||||||    
T  10322907 ttatgttttaggtccctataaataggcgagtttccaacattagtccctacttaaattttattaaatttttg 10322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 25423273 - 25423203
Alignment:
Q  284 ttatgttttagg-tcttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||| || |||||||||||| ||||| || | ||||||||| |||||||||||||||||||||    
T  25423273 ttatgttttaggatcctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttg 25423203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 31470668 - 31470738
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||| |||||||||||| |||||  || | ||||||||| |||||||||||||||||||||    
T  31470668 ttatgttttaggtccttataaataggcatgttttcaacattagtccctacttaaattttattaaatttttg 31470738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 35061404 - 35061332
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    ||||||||||||||  |||||||||||| ||||  || | ||||||||| |||||||||||||||||||||||    
T  35061404 ttatgttttaggtccctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttttgat 35061332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 31316244 - 31316322
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgatttccaa 361  Q
    ||||||||||| || ||||||||||| | ||||| || | ||||||||| |||||||||||||||||||| || |||||    
T  31316244 ttatgttttagatccttataaataggtgcgtttccaacattagtccctacttaaattttattaaattttttatctccaa 31316322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 44208581 - 44208651
Alignment:
Q  284 ttatgttttaggtctt-ataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    |||||||||||||||| |||||||| || ||||  || | ||||||||| |||||||||||||||||||||    
T  44208581 ttatgttttaggtctttataaatagacgcgttttcaacattagtccctacttaaattttattaaatttttg 44208651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 53572099 - 53572043
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||| |||||| ||| | ||||| ||| |||||||||||||||||||||||    
T  53572099 tataaataggtgtgtttttaacattagtctctacttaaattttattaaatttttgat 53572043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 33688381 - 33688451
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||| | ||||| || | |||| |||| |||||||||||||||||||||    
T  33688381 ttatgttttaggtccctataaataggtgcgtttccaacattagttcctacttaaattttattaaatttttg 33688451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 45046787 - 45046733
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||| || ||||| || | ||||||||| |||||||||||||||||||||    
T  45046787 tataaatagacgcgtttccaacattagtccctacttaaattttattaaatttttg 45046733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 40170077 - 40170145
Alignment:
Q  284 ttatgttttaggtc-ttataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttt 351  Q
    |||||||||||||| ||| |||||||| |||||| || | |||||| || ||||||||||||| |||||    
T  40170077 ttatgttttaggtccttacaaataggcttgtttccaacattagtccatatttaaattttattatatttt 40170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 44210057 - 44210001
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||| |||| ||| | |||||  || |||||||||||||||||||||||    
T  44210057 tataaataggcgcgtttttaacattagtctttacttaaattttattaaatttttgat 44210001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 10539 - 10469
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||| ||||||||| ||  ||| ||||| ||||| ||| |||||||||||||||||||||    
T  10539 ttatgttttaggtctctataaatagacgcatttttaatattagtctctacttaaattttattaaatttttg 10469  T

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Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 23448 - 23392
Alignment:
Q  299 tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||||||||||| ||||| || | ||||||||| ||||||||||||| |||||||||    
T  23448 tataaataggcgcgtttccaacattagtccctacttaaattttattacatttttgat 23392  T

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Target: scaffold0097; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 25639 - 25569
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttg 353  Q
    ||||||||||||||  |||||||||||| ||||  || | |||||| || |||||||||||||||||||||    
T  25639 ttatgttttaggtccctataaataggcgcgttttcaacattagtccatacttaaattttattaaatttttg 25569  T

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Target: scaffold0148 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 38969 - 38897
Alignment:
Q  284 ttatgttttaggtct-tataaataggcgtgtttctaatagtagtccctaattaaattttattaaatttttgat 355  Q
    |||| |||||||||| ||||||||||| |||||  || | |||| ||||  ||||||||||||||||||||||    
T  38969 ttatattttaggtctctataaataggcatgttttcaacattagttcctacataaattttattaaatttttgat 38897  T

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