View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8933_low_9 (Length: 292)
Name: NF8933_low_9
Description: NF8933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8933_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 34863682 - 34863421
Alignment:
| Q |
19 |
cctagggtttgaatcgtaatttgagtgtagtgtttgactgaagatctgaaatttgcaattgattcgtagtgttatgtgtttgaggtgttgctatcaatgt |
118 |
Q |
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| T |
34863682 |
cctagggtttgaatcgtaatttgagtgtagtgtttgactgaagatctgaaatttgcaattgattcgtagtgttatgtgtttgagatgttgctatcaatgt |
34863583 |
T |
|
| Q |
119 |
agcaccgacacttctgatccaatgcgtgtcaggtgtttgacaaaacacctacactagtgattgcattcaattaagtcattttttcaaataattatccgtg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34863582 |
agcaccgacacttctgatccaatgcgtgtcaggtgttcgacaaaacacctacactagtgattacattcaattaagtcattttttcaaataattatccgtg |
34863483 |
T |
|
| Q |
219 |
tcagtgtttggtgtctgtatcagtgtttcatagattgtgatgcatattttgataattgatgt |
280 |
Q |
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| T |
34863482 |
tcagtgtttggtgtctgtatcagtgtttcatagattgtgatgcatattttgataattgatgt |
34863421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 31965156 - 31965193
Alignment:
| Q |
175 |
gtgattgcattcaattaagtcattttttcaaataatta |
212 |
Q |
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| T |
31965156 |
gtgattgcattcaattatgtcattttttcaaataatta |
31965193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 5109972 - 5110016
Alignment:
| Q |
177 |
gattgcattcaattaagtcattttttcaaataattatccgtgtca |
221 |
Q |
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| T |
5109972 |
gattgcatttaattatgtcattttttcaaataattaccagtgtca |
5110016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 10415155 - 10415215
Alignment:
| Q |
183 |
attcaattaagtcattttttcaaataattatccgtgtcagtgtttggtgtctgtatcagtg |
243 |
Q |
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||||||||| | |||||| |||||| || ||| ||||||||||||||||| ||| |||||| |
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| T |
10415155 |
attcaattatgccattttctcaaattatcatcggtgtcagtgtttggtgtttgtgtcagtg |
10415215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 26870497 - 26870541
Alignment:
| Q |
176 |
tgattgcattcaattaagtcattttttcaaataattatccgtgtc |
220 |
Q |
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||||| ||||||||||||||| ||||||||||||||||| ||||| |
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| T |
26870497 |
tgattacattcaattaagtcaatttttcaaataattatcagtgtc |
26870541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 18263600 - 18263556
Alignment:
| Q |
116 |
tgtagcaccgacacttctgatccaatgcgtgtcaggtgtttgaca |
160 |
Q |
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| T |
18263600 |
tgtagcaccgacacttctgatcgaagacgtgtcaggtgcttgaca |
18263556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 5223659 - 5223615
Alignment:
| Q |
175 |
gtgattgcattcaattaagtcattttttcaaataattatccgtgt |
219 |
Q |
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||||||||||||||||| || ||| ||||||||||||||| |||| |
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| T |
5223659 |
gtgattgcattcaattatgtaattatttcaaataattatcagtgt |
5223615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 30940801 - 30940837
Alignment:
| Q |
176 |
tgattgcattcaattaagtcattttttcaaataatta |
212 |
Q |
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||||||||||||||||| |||||||||||||| |||| |
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| T |
30940801 |
tgattgcattcaattaaatcattttttcaaattatta |
30940837 |
T |
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