View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8934_high_10 (Length: 261)
Name: NF8934_high_10
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 32822472 - 32822729
Alignment:
| Q |
1 |
ctgctatgcagcggggatgnnnnnnngagagatttgttgcttttgctttgattgagtctctgtactcttcgaacttggttatggttttctgtgtgttctg |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32822472 |
ctgctatgcagcggggatgtttttttgagagatttgttgcttttgctttgattgagtctctgtactcttcgaacttggttatggttttctgtgtgttctg |
32822571 |
T |
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| Q |
101 |
gactttaaggatgcggtcgattttacggacgggagattgcttctttagccagcttgagtgaaatattatttcaactatgttcttgcttgtatcttctgga |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32822572 |
gactttaaggatgcggtcgattttacagacgggagattgcttctttagccagcttgagtgaaatattatttcaactatgttcttgcttgtatcttctgga |
32822671 |
T |
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| Q |
201 |
cccatctcagaaactaatatatgcataaggaaaacataaaatgaaatataattaaaca |
258 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
32822672 |
cccagctcagaaactaatatatgcataaggaaaaaataaaatgaaagataatcaaaca |
32822729 |
T |
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