View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8934_high_13 (Length: 225)

Name: NF8934_high_13
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8934_high_13
NF8934_high_13
[»] chr3 (12 HSPs)
chr3 (13-225)||(6246012-6246224)
chr3 (13-206)||(6266414-6266607)
chr3 (13-219)||(6259882-6260088)
chr3 (13-219)||(6169619-6169825)
chr3 (58-225)||(6238381-6238548)
chr3 (14-225)||(6143026-6143234)
chr3 (13-223)||(13269705-13269912)
chr3 (171-225)||(6900819-6900873)
chr3 (73-225)||(6590523-6590675)
chr3 (76-195)||(6883274-6883390)
chr3 (166-219)||(5250887-5250940)
chr3 (129-190)||(8568172-8568233)
[»] scaffold0425 (1 HSPs)
scaffold0425 (169-225)||(13154-13210)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 6246224 - 6246012
Alignment:
Q  13 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6246224 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 6246125  T
Q  113 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6246124 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 6246025  T
Q  213 tcttgcagatcaa 225  Q
    |||||||||||||    
T  6246024 tcttgcagatcaa 6246012  T

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Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 6266607 - 6266414
Alignment:
Q  13 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6266607 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactgttggacatcattgcta 6266508  T
Q  113 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggct 206  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6266507 gtgactctgcaaatcaaaagggaaagatacaacgctttctttcaggttctatcaatcggtttgaatctaggattaaagtattgctcaagaggct 6266414  T

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Target: chr3; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 6260088 - 6259882
Alignment:
Q  13 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 112  Q
    |||||||||||| |||||||| ||| |  |||||||  |||| ||||||||| ||||||||||||||||||||| || |||||||||||  |||||||||    
T  6260088 gcagagacaaagcagtacgaggatctaggcgtgaagtgttggcttgatgatgtgagtaatgaggtatacgaattggaacaactattggatgtcattgcta 6259989  T
Q  113 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 212  Q
     |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6259988 ctgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgcttaagaggctagagtt 6259889  T
Q  213 tcttgca 219  Q
    |||||||    
T  6259888 tcttgca 6259882  T

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Target: chr3; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 6169825 - 6169619
Alignment:
Q  13 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 112  Q
    |||||||||||| ||||||| |||| | |||| ||||||||||||||||||   || ||| || |||||||| |||| ||||| |||||  |||||||||    
T  6169825 gcagagacaaagcagtacgaaaatctagacgtaaagaattgggttgatgatatcaggaataagatatacgaagtagagcaactgttggatgtcattgcta 6169726  T
Q  113 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 212  Q
     |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |    
T  6169725 ctgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgatcaagaggctaaaggt 6169626  T
Q  213 tcttgca 219  Q
    |||||||    
T  6169625 tcttgca 6169619  T

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Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 6238548 - 6238381
Alignment:
Q  58 gatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcag 157  Q
    |||||||  ||| ||| |||||| |||||||| ||| |||||||  ||||||||| ||| |||||| |||||||||||||||||||||||| ||||||||    
T  6238548 gatgatggcagtgatgcggtataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctatctttcag 6238449  T
Q  158 gttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaa 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  6238448 gttctatcaatcgatttgaatctaggattaaagtattgctcaagaggttagagtttcttgcaaatcaa 6238381  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 6143234 - 6143026
Alignment:
Q  14 cagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgctag 113  Q
    ||||||||||| ||||| | ||||||| ||||||||||||| ||||||||| |||| ||| | |||| ||| | || |||||||||||  | |||||||     
T  6143234 cagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgttatatgaagtggagcaactattggatgttattgctac 6143135  T
Q  114 tgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagttt 213  Q
    ||||||   | | | |||||| ||||||  |||||||||||| | || ||| ||||||||||||||||| ||||||||| |||| ||||||||||||||     
T  6143134 tgacgc---acaccgaaaggggaagataagacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggctagagttc 6143038  T
Q  214 cttgcagatcaa 225  Q
    | ||||| ||||    
T  6143037 cgtgcaggtcaa 6143026  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 13269705 - 13269912
Alignment:
Q  13 gcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatgcgagtaatgaggtatacgaattagatcaactattggacatcattgcta 112  Q
    |||||||| ||| ||||| | ||||||  |||| |||||||| |||||||||  ||||||||||||||||||||||| |||||||||||  | |||| ||    
T  13269705 gcagagactaagcagtaccaaaatcaacgcgtggagaattggcttgatgatgtcagtaatgaggtatacgaattagagcaactattggatgtgattgtta 13269804  T
Q  113 gtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtt 212  Q
     ||||   ||| ||| |||||| ||||||   || |||||||| | || ||| ||||||||||||||||| |||||||  | |||  ||||||||| |||    
T  13269805 ctgac---gcacaacgaaaggggaagataagtcgttttctttctgcttttattaatcgatttgaatctagaattaaagcttcgctggagaggctagtgtt 13269901  T
Q  213 tcttgcagatc 223  Q
    |||||||||||    
T  13269902 tcttgcagatc 13269912  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 6900873 - 6900819
Alignment:
Q  171 atttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaa 225  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  6900873 atttgaatctaggattaaagtattgctgaagaggctaaagtttattgcagatcaa 6900819  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 6590523 - 6590675
Alignment:
Q  73 gaggtatacgaattagatcaactattggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcga- 171  Q
    |||||||  |||||||| |||||||||||  | ||||||  ||||||   | ||| |||||| ||||||| ||||||||||||| ||| ||| ||||||     
T  6590523 gaggtatttgaattagagcaactattggatgtgattgctgatgacgc---acaaccaaagggcaagatacgacgctttctttcacgttttattaatcgag 6590619  T
Q  172 --tttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaa 225  Q
      |||||| |||||||||||| |||| |  |||  |||||||||||||||||||||    
T  6590620 gatttgaagctaggattaaagcattgatacagaacctagagtttcttgcagatcaa 6590675  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 6883390 - 6883274
Alignment:
Q  76 gtatacgaattagatcaactattggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg 175  Q
    ||||||||||||||||||||||||||  | ||||| | ||||||   | |||||| ||| |||||||||||| |||||||||||| ||| |||| || |     
T  6883390 gtatacgaattagatcaactattggatgtgattgcgactgacgc---acaacaaatgggcaagatacaacgcattctttcaggttttattaatcaatgtc 6883294  T
Q  176 aatctaggattaaagtattg 195  Q
    ||| ||||||  ||||||||    
T  6883293 aatataggatggaagtattg 6883274  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 5250940 - 5250887
Alignment:
Q  166 aatcgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgca 219  Q
    |||| |||||||||||||||||||| ||||||  ||| |||||| |||||||||    
T  5250940 aatccatttgaatctaggattaaagaattgctagagaagctagaatttcttgca 5250887  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 8568172 - 8568233
Alignment:
Q  129 aaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaag 190  Q
    |||||||||||  |||| ||| |||||||||| ||  |||||||||||||||||||| ||||    
T  8568172 aaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatctaggatcaaag 8568233  T

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Target: scaffold0425 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 13154 - 13210
Alignment:
Q  169 cgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaa 225  Q
    ||||| |||||||||| |||||||||||| | |||| ||||||| ||||||||||||    
T  13154 cgattggaatctaggagtaaagtattgctgaggaggttagagttccttgcagatcaa 13210  T

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