View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8934_high_14 (Length: 207)
Name: NF8934_high_14
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 49756609 - 49756774
Alignment:
| Q |
20 |
agaggagctggcattgaggtttgttggtttcacattatgatgatttcatatatgcatgcagtaatgtttgtggatggagatgaatttatttattaaaaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49756609 |
agaggagctggcattgaggtttgttggtttcacattatgatgatttcatatatgcatgcagtaatgtttgtggatggagatgaatttatttattaaaaga |
49756708 |
T |
|
| Q |
120 |
gtttgaacttaataattgttaggtgaggattgccagaatctttaacacatacggaccaagaatgtg |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49756709 |
gtttgaacttaataattgttaggtgaggattgccagaatctttaacacatacggaccaagaatgtg |
49756774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University