View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8934_high_5 (Length: 396)
Name: NF8934_high_5
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_high_5 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 205 - 396
Target Start/End: Complemental strand, 18016215 - 18016024
Alignment:
| Q |
205 |
aatgtattggtcagtgtgtatttcaatataccttctcattcaataaaatatgatagaccattgaatccatttcgctaagtcctaaaactatttcattctc |
304 |
Q |
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| T |
18016215 |
aatgtattggtcagtgtgtatttcaatataccttctcattcaataaaatatgatagaccattgaatccatttctctaagtcctaaaactatttcattctc |
18016116 |
T |
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| Q |
305 |
taatcctctcatgtgagtgatagtataatccgtgtattaccaccacaagtgagtggttgttctaacaaatatggtctttgaccaacatagtt |
396 |
Q |
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| T |
18016115 |
caatcctctcatgtgagtgatagtataatccgtgtattaccactacaagtgagtggttgttctaacaaatatggcttttcaccaacatagtt |
18016024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 18016342 - 18016218
Alignment:
| Q |
18 |
attgaccagttcatgaaacaacaaaataagaaggaaaagaaaaaat-caaagatgcatatcctcttgccttgaggcttttgctgaaggatttcttcagat |
116 |
Q |
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| T |
18016342 |
attgaccagttcatgaaacaacaaaataagaaggaaaagaaaaaatacaaagatgcatatcctcttgccttgaggcttttgctgaaggatttcttcagat |
18016243 |
T |
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| Q |
117 |
ccttgaaacagaacgatctaagact |
141 |
Q |
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| T |
18016242 |
ccttgaaacagaacgacctaagact |
18016218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 205 - 396
Target Start/End: Original strand, 3063105 - 3063296
Alignment:
| Q |
205 |
aatgtattggtcagtgtgtatttcaatataccttctcattcaataaaatatgatagaccattgaatccatttcgctaagtcctaaaactatttcattctc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3063105 |
aatgtattggtcagtgtgtatttcaatataccttctcattcaataaaatatgatagaccattgaatccatttctctaagtcctaaaactatttcattctc |
3063204 |
T |
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| Q |
305 |
taatcctctcatgtgagtgatagtataatccgtgtattaccaccacaagtgagtggttgttctaacaaatatggtctttgaccaacatagtt |
396 |
Q |
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| T |
3063205 |
caatcctctcatgtgagtgatagtataatccgtgtattaccactacaagtgagtggttgttctaacaaatatggcttttcaccaacatagtt |
3063296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 3062979 - 3063102
Alignment:
| Q |
18 |
attgaccagttcatgaaacaacaaaataagaaggaaaagaaaaaatcaaagatgcatatcctcttgccttgaggcttttgctgaaggatttcttcagatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3062979 |
attgaccagttcatgaaacaacaaaataagaaggaaaagaaaaaatcaaagatgcatatcctcttgccttgaggcttttgctgaaggatttcttcagatc |
3063078 |
T |
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| Q |
118 |
cttgaaacagaacgatctaagact |
141 |
Q |
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| T |
3063079 |
cttgaaacagaacgacctaagact |
3063102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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