View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8934_low_1 (Length: 1102)
Name: NF8934_low_1
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_low_1 |
 | |
|
| [»] scaffold0225 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 72 - 591
Target Start/End: Complemental strand, 44894894 - 44894370
Alignment:
| Q |
72 |
accacgtcatgtccaccaggtagggatcgttttgcaacaacgggtccgtggagtttggaatgggtaaagagccaaaatcttgatattgttgaaggtaatt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44894894 |
accacgtcatgtccaccaggtagggatcgttttgcaacaacgggtccgtggagtttggaatgggtaaagagccaaaatcttgatattgttgaaggtaatt |
44894795 |
T |
|
| Q |
172 |
tgccttccgc----catgtctcaattaattcttcttctacaagtggaccgtgtgttaatnnnnnnnnggtagtggctatctgcgtcatacgacgcaaagt |
267 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
44894794 |
tgtcttccgcgaaacatgtctcaattaattcttcttctacaagtggatcgcatgttaataaaaaaaagatagtggctatctgcatcatacgacgcaaagt |
44894695 |
T |
|
| Q |
268 |
atgaggcgtattgatcggctaccgacgaaagatcgtgaagatgttttacgtgctctaacaagaaatgttaaaaa-aggatgaggccgtgtggtgacactc |
366 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44894694 |
atgaggcgtattgctcggctaccgacgaaagatcgtgaagatgttttacgtgctctaacaagaaatgttaaaaagaggatgaggccgtgtggtgacactc |
44894595 |
T |
|
| Q |
367 |
aggttcaagctatctcaaaagacaaagtggcacagcaaagtgtttctcagtcatctgttaataatgactgggagaattggttggtgcttcatggtactca |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44894594 |
aggttcaagctatctcaaaagacaaagtggcacaacaaagtgtttctcagtcatctgttaataatgactgggagaattggttggtgcttcatggtactga |
44894495 |
T |
|
| Q |
467 |
tcgagtggcacaggaggatgttatggggataggaaaggagattggactaaaatttggcggggataataataatatgtttgatgttttgtctagtgtgaga |
566 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44894494 |
tcgagtggcacaggaggatgttacggggataggaaaggagattggactaaaatttggcggagataataataatatgtttgatgttttgtctagtctgaga |
44894395 |
T |
|
| Q |
567 |
cgaaaaaataaagagggtgttggga |
591 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44894394 |
cgaaaaaataaagagggtgttggga |
44894370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 667 - 1089
Target Start/End: Complemental strand, 44894294 - 44893872
Alignment:
| Q |
667 |
aaatgaagctcatttcatggaacgttcggggtttgggaggttttgaggagaggagggaggtgagacagttggtgacggagaaaagtctttttattctatg |
766 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44894294 |
aaatgaagctcatttcatggaacgttcggggtttgggaggttttgagaagaggagggaggtgagacagttggtgacggagaaaagtccttttattctatg |
44894195 |
T |
|
| Q |
767 |
tattcaggaaacaaagtgtgttatgtttgatgatatgttatgtaaatctatttagaacgatgcaaatgttggttattcttttcagccttctctaggagcc |
866 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44894194 |
tattcaggaaacaaagtgtgttatgtttgatgatatgttatgtaaatctatttggagcgatgcaaatgttggttattcttttcagccttctctaggagcc |
44894095 |
T |
|
| Q |
867 |
ttcggcggtttagtaactcaatgggatagttcacaggttgaaatatggtcgactacttcttttgatcatgtgttgctgataacgggtcgtttttacaagt |
966 |
Q |
| |
|
| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44894094 |
tccggcggtttagtaactctatgagatagttcacaggttgaaatatggtcgactacttcttttgatcatgtgttgctgataacgggtcgtttttacaagt |
44893995 |
T |
|
| Q |
967 |
caaatgagcaatttgttgtgctcaatatttatgcaccttgtgatgtatctcgtcaacactctctttgggttaatatttccagcaaattgggtacttatgt |
1066 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44893994 |
caaatgagcaatttgttgtgctcaatatttatgcaccttgtgatgtatctcgtcaacactctctttgggttaatatttccagcaaattgggtacttatgc |
44893895 |
T |
|
| Q |
1067 |
tgataaaaatgtttgtatctgtg |
1089 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44893894 |
tgataaaaatgtttgtatctgtg |
44893872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 3e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 667 - 1001
Target Start/End: Complemental strand, 8252126 - 8251792
Alignment:
| Q |
667 |
aaatgaagctcatttcatggaacgttcggggtttgggaggttttgaggagaggagggaggtgagacagttggtgacggagaaaagtctttttattctatg |
766 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||| || |||| ||||||||||||||||||||||||||| |||||| ||| ||||||| || |
|
|
| T |
8252126 |
aaatgaagctcatttcttggaatgtacggggtttggggggacatgagaagaggagggaggtgagacagttggtgagggagaagtgtccgcttattctttg |
8252027 |
T |
|
| Q |
767 |
tattcaggaaacaaagtgtgttatgtttgatgatatgttatgtaaatctatttagaacgatgcaaatgttggttattcttttcagccttctctaggagcc |
866 |
Q |
| |
|
|||| ||||||||||||||| ||| ||| ||||||| | ||||| ||||| | | |||||||||||||||||||||||||||| | || | || ||| |
|
|
| T |
8252026 |
tattaaggaaacaaagtgtggtattttttatgatataatgtgtaattctatctggggcgatgcaaatgttggttattcttttcagacgtcgttgggtgcc |
8251927 |
T |
|
| Q |
867 |
ttcggcggtttagtaactcaatgggatagttcacaggttgaaatatggtcgactacttcttttgatcatgtgttgctgataacgggtcgtttttacaagt |
966 |
Q |
| |
|
| ||| ||||| || |||| ||||| | |||| |||| ||| | ||||| |||||||||||||| ||||||||| ||||| | |||||||||||||||| |
|
|
| T |
8251926 |
tccggtggtttggttactctttgggacaattcagaggtggaagtgtggtccactacttcttttgagcatgtgttggtgatagcaggtcgtttttacaagt |
8251827 |
T |
|
| Q |
967 |
caaatgagcaatttgttgtgctcaatatttatgca |
1001 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||| |
|
|
| T |
8251826 |
ctaatgagcagtttgttgttttcaatatttatgca |
8251792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 405 - 578
Target Start/End: Complemental strand, 8252386 - 8252213
Alignment:
| Q |
405 |
agtgtttctcagtcatctgttaataatgactgggagaattggttggtgcttcatggtactcatcgagtggcacaggaggatgttatggggataggaaagg |
504 |
Q |
| |
|
|||| ||||||||| || ||||||||||| ||| |||| ||||||||||||||||||||| || | || || ||||| ||| ||||||||| |||| |
|
|
| T |
8252386 |
agtgcttctcagtcgtcagttaataatgagtggcagaactggttggtgcttcatggtactgattgtgtaacaacagaggacgttcgggggatagggaagg |
8252287 |
T |
|
| Q |
505 |
agattggactaaaatttggcggggataataataatatgtttgatgttttgtctagtgtgagacgaaaaaataaa |
578 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
8252286 |
agattgggataaaatttgcaggggataaaaataatatgtttgatgtgttgtctagtgtgagaagaaaaaataaa |
8252213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 3e-48; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 668 - 1042
Target Start/End: Complemental strand, 19156937 - 19156563
Alignment:
| Q |
668 |
aatgaagctcatttcatggaacgttcggggtttgggaggttttgaggagaggagggaggtgagacagttggtgacggagaaaagtctttttattctatgt |
767 |
Q |
| |
|
||||||||| ||||||||||| || ||||| |||| ||||||| ||||||||||||||||||| ||||||| | |||| ||| ||||||||| ||| |
|
|
| T |
19156937 |
aatgaagcttatttcatggaatgtaaggggtctggggagttttgaaaagaggagggaggtgagacaattggtgaggtagaagtgtccttttattctttgt |
19156838 |
T |
|
| Q |
768 |
attcaggaaacaaagtgtgttatgtttgatgatatgttatgtaaatctatttagaacgatgcaaatgttggttattcttttcagccttctctaggagcct |
867 |
Q |
| |
|
||||||||| | || ||||||| |||||||||||| | ||| || | |||| | ||| |||||||| |||||||||||||||||||| | || |||| |
|
|
| T |
19156837 |
attcaggaatccaaatgtgttaattttgatgatatgatgtgtcaaaccatttggggcgacccaaatgtttgttattcttttcagccttctttgggtgcct |
19156738 |
T |
|
| Q |
868 |
tcggcggtttagtaactcaatgggatagttcacaggttgaaatatggtcgactacttcttttgatcatgtgttgctgataacgggtcgtttttacaagtc |
967 |
Q |
| |
|
|| ||||| ||||||| ||||||| || |||| ||| | |||||||||||||||||||||||||||||| | || || || ||||||||||| |
|
|
| T |
19156737 |
caggtggtttggtaactctttgggataattttgaggtggaagtgtggtcgactacttcttttgatcatgtgttgataattacaggcatattttacaagtc |
19156638 |
T |
|
| Q |
968 |
aaatgagcaatttgttgtgctcaatatttatgcaccttgtgatgtatctcgtcaacactctctttgggttaatat |
1042 |
Q |
| |
|
|||||||||||||||||| || || ||||||| || |||||||| ||| || | || |||||||||| ||||| |
|
|
| T |
19156637 |
taatgagcaatttgttgtgatccatgtttatgccccgtgtgatgtttctagttagcaggctctttgggtgaatat |
19156563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 411 - 591
Target Start/End: Complemental strand, 19157190 - 19157010
Alignment:
| Q |
411 |
tctcagtcatctgttaataatgactgggagaattggttggtgcttcatggtactcatcgagtggcacaggaggatgttatggggataggaaaggagattg |
510 |
Q |
| |
|
|||||| |||| ||||||||||| ||| | || ||||||||||||||||||| | || |||||| | ||||| |||| || | |||| ||||| ||| |
|
|
| T |
19157190 |
tctcagccatcggttaataatgattggcaaaactggttggtgcttcatggtattgataaagtggctaatgaggacgttaaggagttagggaaggaacttg |
19157091 |
T |
|
| Q |
511 |
gactaaaatttggcggggataataataatatgtttgatgttttgtctagtgtgagacgaaaaaataaagagggtgttggga |
591 |
Q |
| |
|
| || |||||| || || || |||| |||||||||||| || ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19157090 |
gtctcaaatttaatggagacaaaaatattatgtttgatgtgttatctagtgtgagaccaaaaaataaagagggtgttggga |
19157010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 19157349 - 19157264
Alignment:
| Q |
253 |
catacgacgcaaagtatgaggcgtattgatcggctaccgacgaaagatcgtgaagatgttttacgtgctctaacaagaaatgttaa |
338 |
Q |
| |
|
|||||| ||||||| ||||||||||||| | | || ||| | |||||||||||||||||| | |||||||| | |||||||||||| |
|
|
| T |
19157349 |
catacggcgcaaagcatgaggcgtattgctagacttccggcaaaagatcgtgaagatgttctccgtgctctgaaaagaaatgttaa |
19157264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 715 - 781
Target Start/End: Complemental strand, 17257481 - 17257415
Alignment:
| Q |
715 |
agaggagggaggtgagacagttggtgacggagaaaagtctttttattctatgtattcaggaaacaaa |
781 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||| ||| ||||| |||||||| |||||||| |
|
|
| T |
17257481 |
agaggagggaagtgaggaagttggtgggggagaaaagtcctttcattctttgtattcaagaaacaaa |
17257415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 720 - 783
Target Start/End: Original strand, 13154420 - 13154483
Alignment:
| Q |
720 |
agggaggtgagacagttggtgacggagaaaagtctttttattctatgtattcaggaaacaaagt |
783 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||| |||||| | |||||||| |||||||||| |
|
|
| T |
13154420 |
agggaggtgaggcagttggtgagggagaaaaatctatttattttgtgtattcaagaaacaaagt |
13154483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 24733944 - 24733992
Alignment:
| Q |
414 |
cagtcatctgttaataatgactgggagaattggttggtgcttcatggta |
462 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
24733944 |
cagtcatctgttaataatgattggatgaattggttggttcttcatggta |
24733992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 411 - 462
Target Start/End: Original strand, 2726 - 2777
Alignment:
| Q |
411 |
tctcagtcatctgttaataatgactgggagaattggttggtgcttcatggta |
462 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
2726 |
tctcagtcgtctgttaataatgactggatgaattggttggctcttcatggta |
2777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 410 - 460
Target Start/End: Complemental strand, 29549457 - 29549407
Alignment:
| Q |
410 |
ttctcagtcatctgttaataatgactgggagaattggttggtgcttcatgg |
460 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||||||||| |||||||| |
|
|
| T |
29549457 |
ttctcaatcatctattaataatgactggtcgaattggttggttcttcatgg |
29549407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 417 - 462
Target Start/End: Original strand, 6921072 - 6921117
Alignment:
| Q |
417 |
tcatctgttaataatgactgggagaattggttggtgcttcatggta |
462 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || |||||||||| |
|
|
| T |
6921072 |
tcatctgttaataatgactggtcgaattggttagtacttcatggta |
6921117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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