View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8934_low_10 (Length: 436)
Name: NF8934_low_10
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 37407388 - 37407667
Alignment:
| Q |
8 |
tggtgttctgacttatctattcacaaaaacaattagagaataccctcgtggaattacttatagaggtctactggcaaaaatgcatgaagaaattnnnnnn |
107 |
Q |
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| T |
37407388 |
tggtgttctgacttatctattcacaaaaacaattagagaataccctcgtggaattacttatagaggtctactggcaaaaatgcatgaagaaattaaaaaa |
37407487 |
T |
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| Q |
108 |
nttaacagaaacagatcattcagttaccgcatcttgcaccgtaaaattatcgcacaggttggattccatcactagatatataatttgtttatattaatct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37407488 |
attaacagaaacagatcattcagttaccgcatcttgcaccgtaaaattatcgcacaggttggattccatcactag----ataatttgtttatattaatct |
37407583 |
T |
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| Q |
208 |
tgcctttttgtttaccatgtgctctaattacgagagatgtatcatgcatgtaagttaatgttatgttattgttttcacaaccaatgtt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37407584 |
----tttttgtttaccatgtgctctaattacgagagatgtatcatgcatgtaagttaatgttatgttattgttttcacaaccaatgtt |
37407667 |
T |
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