View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8934_low_14 (Length: 395)
Name: NF8934_low_14
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 16493418 - 16493796
Alignment:
| Q |
1 |
caaatcatctgtgtaatgagatatcagcattgattttgttcagttcagacttca--aaatagtcactttattaagaaatttcatcattatgctgattaaa |
98 |
Q |
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| T |
16493418 |
caaatcatctgtgaaatgagatatcaacattgattttgttcacttcagacttcacaaaatagtcactttattaagaaatttcatcattatgctgattaaa |
16493517 |
T |
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| Q |
99 |
atcaaacttcataaaattgataaaccacaattgatttctcataaatctagtacattaatctaaaaggggtatcttttatccttgtttgagttctctaaat |
198 |
Q |
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| T |
16493518 |
atcaaacttcataaaattgataaaccacaattgatttctcataaatctagtacattaatctaaaaggggtatcttttatccttgtttgagttctctaaat |
16493617 |
T |
|
| Q |
199 |
ctgaaagcatatcagatgacaagcgaagcaaacgaagacttctctccattttaagttctgtgatgcgtgcaacagttgcgttatgcttgttcaaatcaac |
298 |
Q |
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| T |
16493618 |
ctgaaagcatatcagatgacaatcgaagcagacgaagacttctctccattttaagttctgtgatgcgtgcaacagttgcgttatgcttgttcaaatcaac |
16493717 |
T |
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| Q |
299 |
ggtgttcagtgtgcttacaaagaattgatattgtagcttcgcaagttcctcatacttagcaatttggcgatctaggtca |
377 |
Q |
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| T |
16493718 |
ggtgttcagtgtgcttacaaagaattgatattgtagctttgcaagttcctcatacttagcaatttggtgatctaggtca |
16493796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 221 - 363
Target Start/End: Original strand, 16499019 - 16499161
Alignment:
| Q |
221 |
gcgaagcaaacgaagacttctctccattttaagttctgtgatgcgtgcaacagttgcgttatgcttgttcaaatcaacggtgttcagtgtgcttacaaag |
320 |
Q |
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| T |
16499019 |
gcgaagcaaacgaagacttctctccattttaagttctgtgatacgtgcaacagttgcgttatgtttgttcaaatcaacggtgttcagtgtgctcacaaag |
16499118 |
T |
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| Q |
321 |
aattgatattgtagcttcgcaagttcctcatacttagcaattt |
363 |
Q |
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| T |
16499119 |
aattgatattgtagcttcgcaagttcctcatactttgcaattt |
16499161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 376
Target Start/End: Original strand, 16471132 - 16471323
Alignment:
| Q |
185 |
tgagttctctaaatctgaaagcatatcagatgacaagcgaagcaaacgaagacttctctccattttaagttctgtgatgcgtgcaacagttgcgttatgc |
284 |
Q |
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| T |
16471132 |
tgagttctctaaatgtgaaagcatatcaggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtgatacgtttaacagttgctttatag |
16471231 |
T |
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| Q |
285 |
ttgttcaaatcaacggtgttcag-tgtgcttacaaagaattgatattgtagcttcgcaagttcctcatacttagcaatttggcgatctaggtc |
376 |
Q |
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| T |
16471232 |
ttgttcaaatcta-taagtttagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatacttaccaatctgttgatctaggtc |
16471323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 185 - 376
Target Start/End: Original strand, 16464110 - 16464301
Alignment:
| Q |
185 |
tgagttctctaaatctgaaagcatatcagatgacaagcgaagcaaacgaagacttctctccattttaagttctgtgatgcgtgcaacagttgcgttatgc |
284 |
Q |
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|||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| |
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| T |
16464110 |
tgagttctctaaatgtgaaagcatatctggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtgatacgtttaacagttgcattatag |
16464209 |
T |
|
| Q |
285 |
ttgttcaaatcaacggtgttcag-tgtgcttacaaagaattgatattgtagcttcgcaagttcctcatacttagcaatttggcgatctaggtc |
376 |
Q |
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| T |
16464210 |
ttgttcaaatctac-aagtctagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatacttaccaatctgttgatctaggtc |
16464301 |
T |
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