View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8934_low_16 (Length: 392)

Name: NF8934_low_16
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8934_low_16
NF8934_low_16
[»] chr1 (3 HSPs)
chr1 (6-372)||(15587823-15588196)
chr1 (48-85)||(26070937-26070974)
chr1 (42-74)||(25694424-25694456)
[»] chr5 (2 HSPs)
chr5 (46-85)||(27488459-27488498)
chr5 (48-85)||(13789730-13789767)
[»] chr7 (1 HSPs)
chr7 (47-76)||(44682563-44682592)
[»] chr3 (2 HSPs)
chr3 (48-85)||(53441905-53441942)
chr3 (48-76)||(12747819-12747847)
[»] chr2 (16 HSPs)
chr2 (48-81)||(5109361-5109394)
chr2 (48-85)||(40430779-40430816)
chr2 (44-85)||(45571142-45571183)
chr2 (44-85)||(45574809-45574850)
chr2 (44-85)||(45578476-45578517)
chr2 (44-85)||(45582143-45582184)
chr2 (44-85)||(45585810-45585851)
chr2 (44-85)||(45589477-45589518)
chr2 (44-85)||(45593144-45593185)
chr2 (44-85)||(45596811-45596852)
chr2 (44-85)||(45600478-45600519)
chr2 (44-85)||(45604145-45604186)
chr2 (44-85)||(45607812-45607853)
chr2 (44-85)||(45611479-45611520)
chr2 (44-85)||(45615146-45615187)
chr2 (48-84)||(11794563-11794599)
[»] chr8 (1 HSPs)
chr8 (48-76)||(8793841-8793869)
[»] chr4 (1 HSPs)
chr4 (48-76)||(17236891-17236919)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 372
Target Start/End: Original strand, 15587823 - 15588196
Alignment:
Q  6 ggaggagcagagaaacctacccagccaccagaaggtttgcatatactctctccggtcctatttataagaaacagtttactatcaatatcgtctcttctta 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||| |||||||| | | || || ||||||||    
T  15587823 ggaggagcagagaaacctacccagccaacagaaggtttgcatatactgcctccggtcctatttataagaaacggtttactaccgacat-gtttcttctta 15587921  T
Q  106 aaaactannnnnnnnnnnn--------gtagagcgtaaaagcaaatcatcaaaaccaaaagaaaaatcgtccaagattcgacatctaataccaaaatcaa 197  Q
    |||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15587922 aaaactattttttttgtttttgtttttgtagagcgtaaaagcaaatcatcaaaaccaaaagaaaaatcgtccaagattcgacatctaataccaaaatcaa 15588021  T
Q  198 gacatgaatcaatcgacaacgaaaccaacaccacaactaagaagaacacacgacgccaacagcgatcatcagacccaactgcagactcctcgacccatga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15588022 gacatgaatcaatcgacaacgaaaccaacaccacaactaagaagaacacacgacgccaacagcgatcatcagacccaactgcagactcctcgacccatga 15588121  T
Q  298 ttcttcagccggttcacgacacaggagacatcgtcgtggctctgattcagtgccgcctgatgctccacaaccagg 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15588122 ttcttcagccggttcacgacacaggagacatcgtcgtggctctgattcagtgccgcctgatgctccacaaccagg 15588196  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 26070974 - 26070937
Alignment:
Q  48 atactctctccggtcctatttataagaaacagtttact 85  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  26070974 atactctctccggtcttatttataagaaacattttact 26070937  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 25694456 - 25694424
Alignment:
Q  42 ttgcatatactctctccggtcctatttataaga 74  Q
    |||||||||||| ||||||||||||||||||||    
T  25694456 ttgcatatactccctccggtcctatttataaga 25694424  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 27488498 - 27488459
Alignment:
Q  46 atatactctctccggtcctatttataagaaacagtttact 85  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  27488498 atatactctctccggtcctatatataagaaacaatttact 27488459  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 13789730 - 13789767
Alignment:
Q  48 atactctctccggtcctatttataagaaacagtttact 85  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  13789730 atactccctccggtcctatttataagaaacattttact 13789767  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 76
Target Start/End: Original strand, 44682563 - 44682592
Alignment:
Q  47 tatactctctccggtcctatttataagaaa 76  Q
    ||||||||||||||||||||||||||||||    
T  44682563 tatactctctccggtcctatttataagaaa 44682592  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 53441905 - 53441942
Alignment:
Q  48 atactctctccggtcctatttataagaaacagtttact 85  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  53441905 atactccctccggtcctatttataagaaacattttact 53441942  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 12747847 - 12747819
Alignment:
Q  48 atactctctccggtcctatttataagaaa 76  Q
    |||||||||||||||||||||||||||||    
T  12747847 atactctctccggtcctatttataagaaa 12747819  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 5109361 - 5109394
Alignment:
Q  48 atactctctccggtcctatttataagaaacagtt 81  Q
    ||||||||||||||||||||||||||||| ||||    
T  5109361 atactctctccggtcctatttataagaaaaagtt 5109394  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 40430816 - 40430779
Alignment:
Q  48 atactctctccggtcctatttataagaaacagtttact 85  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  40430816 atactctctccggtcctatttataagagacaatttact 40430779  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45571183 - 45571142
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45571183 gcatatactccctccggtcctatatataagaaacaatttact 45571142  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45574850 - 45574809
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45574850 gcatatactccctccggtcctatatataagaaacaatttact 45574809  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45578517 - 45578476
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45578517 gcatatactccctccggtcctatatataagaaacaatttact 45578476  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45582184 - 45582143
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45582184 gcatatactccctccggtcctatatataagaaacaatttact 45582143  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45585851 - 45585810
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45585851 gcatatactccctccggtcctatatataagaaacaatttact 45585810  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45589518 - 45589477
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45589518 gcatatactccctccggtcctatatataagaaacaatttact 45589477  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45593185 - 45593144
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45593185 gcatatactccctccggtcctatatataagaaacaatttact 45593144  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45596852 - 45596811
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45596852 gcatatactccctccggtcctatatataagaaacaatttact 45596811  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45600519 - 45600478
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45600519 gcatatactccctccggtcctatatataagaaacaatttact 45600478  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45604186 - 45604145
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45604186 gcatatactccctccggtcctatatataagaaacaatttact 45604145  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45607853 - 45607812
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45607853 gcatatactccctccggtcctatatataagaaacaatttact 45607812  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45611520 - 45611479
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45611520 gcatatactccctccggtcctatatataagaaacaatttact 45611479  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 45615187 - 45615146
Alignment:
Q  44 gcatatactctctccggtcctatttataagaaacagtttact 85  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  45615187 gcatatactccctccggtcctatatataagaaacaatttact 45615146  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 11794599 - 11794563
Alignment:
Q  48 atactctctccggtcctatttataagaaacagtttac 84  Q
    |||||| |||||||||||||||||||||||| |||||    
T  11794599 atactccctccggtcctatttataagaaacattttac 11794563  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 8793869 - 8793841
Alignment:
Q  48 atactctctccggtcctatttataagaaa 76  Q
    |||||||||||||||||||||||||||||    
T  8793869 atactctctccggtcctatttataagaaa 8793841  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 17236919 - 17236891
Alignment:
Q  48 atactctctccggtcctatttataagaaa 76  Q
    |||||||||||||||||||||||||||||    
T  17236919 atactctctccggtcctatttataagaaa 17236891  T

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