View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8934_low_2 (Length: 654)
Name: NF8934_low_2
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 39991223 - 39990894
Alignment:
| Q |
14 |
cacagaagaagaatctattgagcttgtgaagcagctaaaaccaactgagtctgccttgctcagttgggctattgatctcatggctgatgttgtccaagag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39991223 |
cacagaagaagaatctattgagcttgtgaagcagctaaaaccaactgagtctgccttactcagttgggctattgatctcatggctgatgttgtccaagag |
39991124 |
T |
|
| Q |
114 |
gaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggtaattagtaaaagtatgcataccctttgtttaatgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39991123 |
gaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggtaattagtaaaagtatgcataccctttgtttaatgt |
39991024 |
T |
|
| Q |
214 |
tcacattttcctattatgttatcctaannnnnnnnnaagacagaataatcaacctatcatggccatatttcaaattagcatttgtagtttccattatcac |
313 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39991023 |
tcacattttcctattatgttatcctaatttttttttaagacagaataatcaacctatcatggccatatttcaaattagcatttgtagtttccattatcac |
39990924 |
T |
|
| Q |
314 |
ataagaaatttgcatactgaaaaattgtct |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39990923 |
ataagaaatttgcatactgaaaaattgtct |
39990894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 425 - 637
Target Start/End: Complemental strand, 39990812 - 39990600
Alignment:
| Q |
425 |
caacctttctcgtttcacagatgtctgatcctctaactgctctaatgcacgctgttcaagtgatgaatttgctcaagacattgataatgaaaacccttag |
524 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39990812 |
caaccattctcgtttcacagatgtctgatcctctaactgctctaatgcacgctgttcaagtgatgaatttgctcaagacattgataatgaaaacccttag |
39990713 |
T |
|
| Q |
525 |
ggaacgtgaagaaacagcaacaggtggatattcacccatgtcctttcgcacatcatttcgccgttcagaggatgaatatgacagtcaacgagaaaccgca |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39990712 |
ggaacgtgaagaaacagcaacaggtggatattcacccatgtcctttcgcacatcatttcgccgttcagaggatgaatatgacagtcaacgagaaaccgca |
39990613 |
T |
|
| Q |
625 |
acaggtggatatt |
637 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39990612 |
acaggtggatatt |
39990600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 534 - 619
Target Start/End: Complemental strand, 39990622 - 39990537
Alignment:
| Q |
534 |
agaaacagcaacaggtggatattcacccatgtcctttcgcacatcatttcgccgttcagaggatgaatatgacagtcaacgagaaa |
619 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| | |||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
39990622 |
agaaaccgcaacaggtggatattcacccatgtcctttcgctcttcatatcgcccgtctgaggatgaatatgacagtcaacgagaaa |
39990537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 43876580 - 43876741
Alignment:
| Q |
18 |
gaagaagaatctattgagcttgtgaagcagctaaaaccaactgagtctgccttgctcagttgggctattgatctcatggctgatgttgtccaagaggagg |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| ||| || || ||||| | ||||||| ||||||| |||||||||||||| || |||| |
|
|
| T |
43876580 |
gaagaagaatctgttgagcttgtgaagcagctgaaaccagttgaatcagctttgcttaattgggctgttgatcttatggctgatgttgtagttgaagagg |
43876679 |
T |
|
| Q |
118 |
agtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggta |
179 |
Q |
| |
|
||| |||||||||| |||| ||||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
43876680 |
agtgtaacaaaatggatgctagaaatattgctatggtttttgctccaaatatgactcaggta |
43876741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 31296183 - 31296344
Alignment:
| Q |
18 |
gaagaagaatctattgagcttgtgaagcagctaaaaccaactgagtctgccttgctcagttgggctattgatctcatggctgatgttgtccaagaggagg |
117 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||| |||||| ||| || || ||||| | ||||||| ||||||| |||||||||||||| || |||| |
|
|
| T |
31296183 |
gaagaagaatttgttgagcttgtgaagctgctgaaaccagttgaatcagctttgcttaattgggctgttgatcttatggctgatgttgtagttgaagagg |
31296282 |
T |
|
| Q |
118 |
agtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggta |
179 |
Q |
| |
|
||| ||||||| ||||||| | ||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
31296283 |
agtataacaaattgaatgctataaatattgctatggtttttgctccaaatatgactcaggta |
31296344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 441 - 566
Target Start/End: Original strand, 43877289 - 43877414
Alignment:
| Q |
441 |
acagatgtctgatcctctaactgctctaatgcacgctgttcaagtgatgaatttgctcaagacattgataatgaaaacccttagggaacgtgaagaaaca |
540 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| || || |||||||||||||| || || ||| ||||| |||| || || | || || ||||||||| |
|
|
| T |
43877289 |
acagatgtccgatccactaactgctctaatgcatgcggtccaagtgatgaatttactgaaaacactgatactgaagacactccgagaccgcgaagaaaca |
43877388 |
T |
|
| Q |
541 |
gcaacaggtggatattcacccatgtc |
566 |
Q |
| |
|
||||||| | ||||||| ||||||| |
|
|
| T |
43877389 |
gcaacagcagaatattcatccatgtc |
43877414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 19177365 - 19177451
Alignment:
| Q |
88 |
atctcatggctgatgttgtccaagaggaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactc |
174 |
Q |
| |
|
|||| |||||||||||||| ||||||||| | | || || ||||||||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
19177365 |
atctgatggctgatgttgtacaagaggagcatctgaataagatgaatgcacgcaacattgccatggtttttgcaccaaacatgactc |
19177451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 36407694 - 36407731
Alignment:
| Q |
141 |
aacattgccatggtttttgctccaaacatgactcaggt |
178 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
36407694 |
aacattgccatggttttcgcaccaaacatgactcaggt |
36407731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University