View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8934_low_21 (Length: 276)
Name: NF8934_low_21
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_low_21 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 49536470 - 49536713
Alignment:
| Q |
23 |
attaacttcctagttgtggaatcatgacacattaagaaaaccttgggcattaagacaagaaattaatttcctctatcttgaatattattagtagtagttg |
122 |
Q |
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| T |
49536470 |
attaacttcctagttgtggaatcatgacacattaagaaaaccttggcccttaagacaagaaattaatttcctctatcttgaatattattagtagtagttg |
49536569 |
T |
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| Q |
123 |
gtgttctatctacctctaattctctatatctatgcaaataccttctcattggttcagcataatcatcaaaaccaagtgtacccaaagcccaacagatatc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49536570 |
gtgttctatctacctctaattctctatatctatgcaaataccttctcattggttcagcataatcatcaaaaccaagtgtacccaaagcccaacagatatc |
49536669 |
T |
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| Q |
223 |
atcaccattcactgtctttctcctttccttcctgcatttctctg |
266 |
Q |
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| T |
49536670 |
atcaccattcactgtctttctcctttccttcctgcatttctctg |
49536713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 38176795 - 38177028
Alignment:
| Q |
32 |
ctagttgtggaatcatgacacattaagaaaaccttgggcattaagacaagaaattaatttcctctatcttgaatattattagtagtagttggtgttctat |
131 |
Q |
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| T |
38176795 |
ctagttgttgaatcatgacacattaagaaaaccttggcccttaagacaagaaattaatttcctctatcttgaatattattagtagtagttggtgttcttt |
38176894 |
T |
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| Q |
132 |
ctacctctaattctctatatctatgcaaataccttctcattggttcagcataatcatcaaaaccaagtgtacccaaagcccaacagatatcatcaccatt |
231 |
Q |
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| T |
38176895 |
ctacccctaattctctatatctatgcaaataccttctcattggttaagcataatcatcaaaaccaagtgtccccaaagcccaacatatatcatcaccatt |
38176994 |
T |
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| Q |
232 |
cactgtctttctcctttccttcctgcatttctct |
265 |
Q |
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| T |
38176995 |
cactgtctttctcctttccttcctgcatttctct |
38177028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 39786245 - 39786345
Alignment:
| Q |
140 |
aattctctatatctatgcaaataccttctcattggttcagcataatcatcaaaaccaagtgtacccaaagcccaacagatatcatcaccattcactgtct |
239 |
Q |
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| T |
39786245 |
aattccctatacttatacaaataccttttgagtggctcagcgtaatcatcaaaccctagtgtccccaaagcccaacaaacatcatcaccattcactgtct |
39786344 |
T |
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| Q |
240 |
t |
240 |
Q |
| |
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| |
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|
| T |
39786345 |
t |
39786345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 14611 - 14738
Alignment:
| Q |
137 |
tctaattctctatatctatgcaaataccttctcattggttcagcataatcatcaaaaccaagtgtacccaaagcccaacagatatcatcaccattcactg |
236 |
Q |
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||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||||| || | |
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| T |
14611 |
tctaactctctatacctatgcaagtaccttctcattggctcagcataatcatcaaaaccaagtgttgctaaagcccaacaaatatcatcaccatttacag |
14710 |
T |
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| Q |
237 |
tctttctcctttccttcctgcatttctc |
264 |
Q |
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| T |
14711 |
tctttctcctttccttcctgcatttctc |
14738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 7523931 - 7523808
Alignment:
| Q |
41 |
gaatcatgacacatt--aagaaaaccttgggcattaagacaagaaattaatttcctctatcttgaatat--tattagtagtagttggtgttctatctacc |
136 |
Q |
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||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
7523931 |
gaatcatgacacattgtaagaaaaccttggcccttaagacaagaaattaatttcctctatcttgaatacactattagtagtagttggtgttatatctacc |
7523832 |
T |
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| Q |
137 |
tctaattctctatatctatgcaaa |
160 |
Q |
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| T |
7523831 |
tctaattctctatatctatgcaaa |
7523808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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