View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8934_low_26 (Length: 258)

Name: NF8934_low_26
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8934_low_26
NF8934_low_26
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-245)||(67507-67751)
[»] scaffold0495 (1 HSPs)
scaffold0495 (18-238)||(7875-8096)
[»] chr6 (2 HSPs)
chr6 (18-238)||(10231152-10231373)
chr6 (109-217)||(31826613-31826720)
[»] chr4 (1 HSPs)
chr4 (56-244)||(15994008-15994195)
[»] chr2 (3 HSPs)
chr2 (18-244)||(14816371-14816600)
chr2 (54-163)||(14462406-14462514)
chr2 (166-219)||(18807099-18807152)
[»] chr8 (1 HSPs)
chr8 (9-238)||(33468172-33468402)
[»] chr7 (5 HSPs)
chr7 (56-235)||(6066689-6066867)
chr7 (87-243)||(36713719-36713874)
chr7 (54-184)||(6650403-6650532)
chr7 (18-52)||(6650818-6650852)
chr7 (54-221)||(11573142-11573307)
[»] chr1 (2 HSPs)
chr1 (54-235)||(18285853-18286033)
chr1 (80-179)||(25447350-25447448)
[»] chr5 (3 HSPs)
chr5 (166-244)||(14051045-14051123)
chr5 (53-179)||(29023166-29023291)
chr5 (54-121)||(14050950-14051017)
[»] chr3 (1 HSPs)
chr3 (54-122)||(8966685-8966754)


Alignment Details
Target: scaffold0001 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 67751 - 67507
Alignment:
Q  1 tttttcatcaagtcttatttggcttttaacataatttgaatttctgttctttaatttggaaggatcgcaatatgagctattttcaaaataagatcgaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  67751 tttttcatcaagtcttatttggcttttaacataatttgaatttctgttctttaatttggaaggatcgcaatatgagctattttcaaaataagaccgaaca 67652  T
Q  101 acttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttggagattaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  67651 acttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttgaagattaag 67552  T
Q  201 tcttttgttatgttttcaggtcgtaccataattttttaatttctc 245  Q
    |||||||||||| |||||||| |||| ||||||||||| ||||||    
T  67551 tcttttgttatgctttcaggttgtacgataattttttattttctc 67507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 7875 - 8096
Alignment:
Q  18 tttggcttttaacataatttgaatttctgttc--ttta--atttggaaggatcgcaatatgagctattttcaaaataagatcgaacaacttttctcttta 113  Q
    ||||||||||||| ||||||| ||||| ||||  ||||  |||||||||||||| |||| |||  ||||||| |||||||  ||||| ||||||||||||    
T  7875 tttggcttttaacgtaatttggatttcagttcgttttattatttggaaggatcgtaataggaggcattttcataataagacggaacatcttttctcttta 7974  T
Q  114 ttggaaaagtttaaacatcaaagcttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttggagattaagtcttttgttatgt 213  Q
    ||||||||| |||||  |  |||||||||||||||||||||| |||||||  |||| ||||||||| |||| |||||||||||| |||| |||||||||     
T  7975 ttggaaaaggttaaa--ttcaagcttattggtggctaaaatcgtattatgcccttt-cgattttgactacacggtttggagattgagtcctttgttatgc 8071  T
Q  214 tttcaggtcgtaccataatttttta 238  Q
    |||||||| ||| ||||||||||||    
T  8072 tttcaggttgtatcataatttttta 8096  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 10231152 - 10231373
Alignment:
Q  18 tttggcttttaacataatttgaatttctgttc--ttta--atttggaaggatcgcaatatgagctattttcaaaataagatcgaacaacttttctcttta 113  Q
    ||||||||||||| ||||||| ||||| ||||  ||||  |||||||||||||| |||| |||  ||||||| |||||||  ||||| ||||||||||||    
T  10231152 tttggcttttaacgtaatttggatttcagttcgttttattatttggaaggatcgtaataggaggcattttcataataagacggaacatcttttctcttta 10231251  T
Q  114 ttggaaaagtttaaacatcaaagcttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttggagattaagtcttttgttatgt 213  Q
    ||||||||| |||||  |  |||||||||||||||||||||| |||||||  |||| ||||||||| |||| |||||||||||| |||| |||||||||     
T  10231252 ttggaaaaggttaaa--ttcaagcttattggtggctaaaatcgtattatgcccttt-cgattttgactacacggtttggagattgagtcctttgttatgc 10231348  T
Q  214 tttcaggtcgtaccataatttttta 238  Q
    |||||||| ||| ||||||||||||    
T  10231349 tttcaggttgtatcataatttttta 10231373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 31826720 - 31826613
Alignment:
Q  109 ctttattggaaaagtttaaacatcaaagcttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttggagattaagtcttttgt 208  Q
    |||||||||||||| |||||| || || | | ||||||| | |||||| |||||| | |||| |||||||| ||   ||||||||| |||| |||||| |    
T  31826720 ctttattggaaaagattaaac-tccaatccttttggtggtttaaatctcattatgctgtttttgattttgagtattcggtttggaggttaaatcttttat 31826622  T
Q  209 tatgttttc 217  Q
    |||||||||    
T  31826621 tatgttttc 31826613  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 244
Target Start/End: Original strand, 15994008 - 15994195
Alignment:
Q  56 ttggaaggatcgcaatatgagctattttcaaaataagatcgaacaacttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaaatc 155  Q
    ||||||||||||||||||||   ||||||| |||||||  |||||||||| || ||||||||||||  |||||| |||| ||||||||||||||||||||    
T  15994008 ttggaaggatcgcaatatgaagcattttcataataagacggaacaactttcctatttattggaaaatcttaaacttcaa-gcttattggtggctaaaatc 15994106  T
Q  156 ttattatgatcttttcgattttgaatacatggtttggagattaagtcttttgttatgttttcaggtcgtaccataattttttaatttct 244  Q
     || |||||  ||||||||||||| ||||||||||||||||| || |||||||||||||||||  | ||| ||||| |||||| |||||    
T  15994107 gtaatatgactttttcgattttgattacatggtttggagattgagccttttgttatgttttcaaattgtaacataaatttttattttct 15994195  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 14816371 - 14816600
Alignment:
Q  18 tttggcttttaacataatttgaatttctgttcttta----atttggaaggatcgcaatatgagctattttcaaaataagatcgaacaacttttctcttta 113  Q
    ||||||||||||||||||||| ||||| |||||||     ||||||||||||| |||||  ||  ||||||| |||||||  |||||||||| | |||||    
T  14816371 tttggcttttaacataatttggatttcagttctttttattatttggaaggatcacaatagaagacattttcataataagacggaacaactttccccttta 14816470  T
Q  114 ttggaaaagtttaaacatcaaagcttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttggagattaagtcttttgttatgt 213  Q
    ||||||||| |||||| ||||| |||||| |||||||||||| |||||||  ||||||||||||||||| |  ||||| ||||| | | ||||||||||     
T  14816471 ttggaaaaggttaaacttcaaa-cttatttgtggctaaaatcatattatgcccttttcgattttgaatatacagtttgaagattgaatattttgttatgc 14816569  T
Q  214 tttcaggtcgtaccataattttttaatttct 244  Q
    ||||| || ||| ||||||| |||| |||||    
T  14816570 tttcatgttgtaacataattctttattttct 14816600  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 14462406 - 14462514
Alignment:
Q  54 atttggaaggatcgcaatatgagctattttcaaaataagatcgaacaacttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaaa 153  Q
    |||||||||||||||||||||||  ||||||| |||||||  |||||||||| |||||||||||||||  |||||| || |||||||||| |||||||||    
T  14462406 atttggaaggatcgcaatatgaggcattttcataataagacggaacaactttcctctttattggaaaatgttaaacttc-aagcttattgatggctaaaa 14462504  T
Q  154 tcttattatg 163  Q
    || |||||||    
T  14462505 tcgtattatg 14462514  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 18807099 - 18807152
Alignment:
Q  166 cttttcgattttgaatacatggtttggagattaagtcttttgttatgttttcag 219  Q
    |||||||||||||| |||||||||||||||   |||| ||||||||| ||||||    
T  18807099 cttttcgattttgagtacatggtttggagagcgagtcctttgttatgctttcag 18807152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 33468402 - 33468172
Alignment:
Q  9 caagtcttatttggcttttaacataatttgaatttctgttcttta--atttggaaggatcgcaatatgagctattttcaaaataagatcgaacaactttt 106  Q
    ||||||| ||||||||||||| |||||||| | |||  || ||||  |||||||||||||||||||||||  ||||| | | |||||   |||||||||     
T  33468402 caagtctcatttggcttttaatataatttggagttcaattttttattatttggaaggatcgcaatatgagacatttttatagtaagacataacaactttc 33468303  T
Q  107 ctctttattggaaaagtttaaacatcaaagcttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttggagattaagtctttt 206  Q
    |||||||||| ||||  |||||| |||| || ||||||||| ||||||| |||||||  |||||||||||||| |||||| ||| |||||| |||| |||    
T  33468302 ctctttattgaaaaaagttaaacttcaa-gcatattggtggttaaaatcgtattatgcccttttcgattttgagtacatgatttagagattgagtccttt 33468204  T
Q  207 gttatgttttcaggtcgtaccataatttttta 238  Q
    |||||| |||||||  ||| ||| ||||||||    
T  33468203 gttatgctttcaggctgtaacatgatttttta 33468172  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 6066867 - 6066689
Alignment:
Q  56 ttggaaggatcgcaatatgagctattttcaaaataagatcgaacaacttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaaatc 155  Q
    |||||||||||| || | |||  ||||||| |||||||  ||||||| || |||||||||||||||  |||||| |||| ||||||||||||||||||||    
T  6066867 ttggaaggatcgaaaaaggaggcattttcataataagacggaacaaccttcctctttattggaaaaagttaaacttcaa-gcttattggtggctaaaatc 6066769  T
Q  156 ttattatgatcttttcgattttgaatacatggtttggagattaagtcttttgttatgttttcaggtcgtaccataatttt 235  Q
     |||||||  ||||||||||| || |||| |||||||||||| | || |||||| || |||||||  ||| |||||||||    
T  6066768 gtattatgtccttttcgatttggagtacacggtttggagattgactcctttgttgtgctttcaggctgtaacataatttt 6066689  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 243
Target Start/End: Complemental strand, 36713874 - 36713719
Alignment:
Q  87 aataagatcgaacaacttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaaatcttattatgatcttttcgattttgaatacatg 186  Q
    |||||||| |||||||||| |||||||||| ||||| |||||| | ||| |||||||||| |||||||   ||||||   |||||||||||||  |||      
T  36713874 aataagatggaacaactttactctttattgtaaaaggttaaacttaaaa-cttattggtgtctaaaattgcattatgcctttttcgattttgagaacaca 36713776  T
Q  187 gtttggagattaagtcttttgttatgttttcaggtcgtaccataattttttaatttc 243  Q
    ||||| ||||||| || |||||| ||||||||  | ||| |||||||||||| ||||    
T  36713775 gtttgtagattaactcctttgttgtgttttcaaattgtaacataattttttattttc 36713719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 184
Target Start/End: Complemental strand, 6650532 - 6650403
Alignment:
Q  54 atttggaaggatcgcaatatgagctattttcaaaataagatcgaacaacttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaaa 153  Q
    ||||| ||||||||||||| |||  ||||  | |||||||  ||||||||||||||| ||||||||||  || ||| || ||| |||||||||| |||||    
T  6650532 atttgaaaggatcgcaataggagacatttctataataagaatgaacaacttttctctgtattggaaaatgttgaacttc-aagtttattggtggttaaaa 6650434  T
Q  154 tcttattatgatcttttcgattttgaataca 184  Q
    || || ||||  |||||| ||||||||||||    
T  6650433 tcatactatgtccttttcaattttgaataca 6650403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 6650852 - 6650818
Alignment:
Q  18 tttggcttttaacataatttgaatttctgttcttt 52  Q
    |||| ||||||||||||||||||||||||||||||    
T  6650852 tttgacttttaacataatttgaatttctgttcttt 6650818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 11573142 - 11573307
Alignment:
Q  54 atttggaaggatcgcaatatgagctattttcaaaataagatc-gaacaacttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaa 152  Q
    |||||||||||||||||||||||   |||||| ||||| ||| ||||||||| | ||||||||| ||||  ||||||  | |||||| ||||||||| ||    
T  11573142 atttggaaggatcgcaatatgag-acttttcacaataa-atcggaacaacttctatctttattgaaaaaagttaaac-gccaagctttttggtggctcaa 11573238  T
Q  153 atcttattatgatcttttcgattttgaatacatggtttggagattaagtcttttgttatgttttcaggt 221  Q
    | | ||||||| | | ||||||||||| ||    |||||||  ||||||| ||| |||||||| |||||    
T  11573239 accctattatgttgtattcgattttgagtattcagtttggaagttaagtcctttattatgtttccaggt 11573307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 18285853 - 18286033
Alignment:
Q  54 atttggaaggatcgcaatatgagctattttcaaaataagatc-gaacaacttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaa 152  Q
    |||||||||||||||||||||||  ||||||| ||||| ||| ||||||||| | ||||||||||||||| |||||| || |||||| |   ||||| ||    
T  18285853 atttggaaggatcgcaatatgagacattttcacaataa-atcggaacaacttctatctttattggaaaaggttaaac-tccaagcttttatttggctcaa 18285950  T
Q  153 atcttattatgatcttttcgattttgaatacatggtttggagattaagtcttttgttatgttttcaggtcgtaccataatttt 235  Q
    ||||||||||| | |||| |||||||| ||    || ||||| ||||||| ||| ||||||||| |||| ||| | |||||||    
T  18285951 atcttattatgttgtttttgattttgagtattcagtctggaggttaagtcctttattatgtttttaggttgtaacgtaatttt 18286033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 179
Target Start/End: Complemental strand, 25447448 - 25447350
Alignment:
Q  80 ttttcaaaataagatcgaacaacttttctctttattggaaaagtttaaacatcaaagcttattggtggctaaaatcttattatgatcttttcgattttga 179  Q
    |||||| |||||||  ||||||||| ||||||||||| ||||| | |||| || |||||||||| ||| ||||||  ||||||| ||| |||||||||||    
T  25447448 ttttcataataagacggaacaacttatctctttattgaaaaaggtaaaac-tccaagcttattgatggttaaaattgtattatgttctcttcgattttga 25447350  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 14051045 - 14051123
Alignment:
Q  166 cttttcgattttgaatacatggtttggagattaagtcttttgttatgttttcaggtcgtaccataattttttaatttct 244  Q
    ||||||||||||||||||| |||| ||||||| ||  |||||||||| |||||||| ||| |||||||||||| |||||    
T  14051045 cttttcgattttgaatacacggttcggagattgagctttttgttatgctttcaggttgtatcataattttttattttct 14051123  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 29023291 - 29023166
Alignment:
Q  53 aatttggaaggatcgcaatatgagctattttcaaaataagatcgaacaacttttctctttattggaaaa-gtttaaacatcaaagcttattggtggctaa 151  Q
    |||||||||||| || |||||||| |||||||| || || |||||||||||| | |||||||||||||| | ||||||  ||| || | ||||||| | |    
T  29023291 aatttggaaggaccgaaatatgagatattttcacaacaa-atcgaacaacttctatctttattggaaaaaggttaaactacaa-gcattttggtggttta 29023194  T
Q  152 aatcttattatgatcttttcgattttga 179  Q
    |||||||||||| | |||| ||||||||    
T  29023193 aatcttattatgttgtttttgattttga 29023166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 14050950 - 14051017
Alignment:
Q  54 atttggaaggatcgcaatatgagctattttcaaaataagatcgaacaacttttctctttattggaaaa 121  Q
    ||||| |||||||||||||  |  |||||| | |||||||| ||||| ||||||||||||||||||||    
T  14050950 atttgaaaggatcgcaatagtatatatttttataataagatggaacatcttttctctttattggaaaa 14051017  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 8966754 - 8966685
Alignment:
Q  54 atttggaaggatcgcaatatgagctattttcaaaataagatc-gaacaacttttctctttattggaaaag 122  Q
    ||||||||||||||||||| |||  |||| ||  |||  ||| |||||||||||||||||||||||||||    
T  8966754 atttggaaggatcgcaataagagacatttccatgatataatcggaacaacttttctctttattggaaaag 8966685  T

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