View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8934_low_27 (Length: 229)
Name: NF8934_low_27
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_low_27 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 48816651 - 48816423
Alignment:
| Q |
1 |
attgttgcaaagagtattgaaatgaagaaggatgttataccattgaggagacgcaaatcaagggaatcaacatcaaatccagcatcaaagtaattatcat |
100 |
Q |
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| T |
48816651 |
attgttgcaaagagtattgaaatgaagaaggatgttataccattgaggagacgcaaatcaagggaatcaacatcaaatccagcatcaaagtaattatcat |
48816552 |
T |
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| Q |
101 |
agaaatgaccgggtgcatcaacatgagtgccagtatgagcaccaatctgcatagcggagccgttagcgcgtgagccattcttcatgctaacagcaagcca |
200 |
Q |
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| T |
48816551 |
agaaatgaccgggtgcatcaacatgagtgccagtatgagcaccaatctgcatagcggagccgttagcgcgtgagccattcttcatgctaacagcaagcca |
48816452 |
T |
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| Q |
201 |
caagaagtttgctaaaccttccttcgact |
229 |
Q |
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| T |
48816451 |
caagaagtttgctaaaccttccttcgact |
48816423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 48829826 - 48829726
Alignment:
| Q |
39 |
accattgaggagacgcaaatcaagggaatcaacatcaaatccagcatcaaagtaattatcatagaaatgaccgggtgcatcaacatgagtgccagtatga |
138 |
Q |
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| T |
48829826 |
accattgaggacgtgcaagtcgagagaatcgacatcaaaaccggcatcgaagtaatgatcgaagacatgtccaggggcatcaacatgagtaccagtatga |
48829727 |
T |
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| Q |
139 |
g |
139 |
Q |
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| T |
48829726 |
g |
48829726 |
T |
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