View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8934_low_4 (Length: 506)
Name: NF8934_low_4
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Original strand, 39389473 - 39389944
Alignment:
| Q |
19 |
cacagaagtggtttccacaatctcttttcaagaggaaattgtgttatccgatgattccaattcggaaagtgctgcgtcatcacatgatagcagaattgat |
118 |
Q |
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| T |
39389473 |
cacagaagtggtttccacaatctcttttcaagaggaaattgtgctatccgatgattccaattcggaaagtgctgcgtcatcacatgatagcagaattgat |
39389572 |
T |
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| Q |
119 |
gaagaatgtttggcttcattaggagcagaaaaagttgaagataatgtggtttcagatattgttgaagaaaaatattgttcatccgaaacaatactaaatg |
218 |
Q |
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| T |
39389573 |
gaagaatgtttggcatcattaggagcagaaaaagttgaagataatgtggtttcagatattgttgaagaaaaatattgttcatccgaaacaatactaaatg |
39389672 |
T |
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| Q |
219 |
gagcggaaattggtattcggaatgaagaacatgtagaagccgaaacagaaactgaagtcaccaatgatggtgtgaatgttgaacctgaaataaattctga |
318 |
Q |
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| T |
39389673 |
gagcggaaattggtattcggaatgaagaacatgtagaagccgaaacagaaactgaagtcaccaatgatggtgtgaatgttaaacctgaaataacttctga |
39389772 |
T |
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| Q |
319 |
tgaaaaaggaaaatcatccatggaggtgaatgatcaacatcaactgatatcggtatcagactcatttcagttgacaactttgcttatgttgttaccaggg |
418 |
Q |
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| T |
39389773 |
tgaaaaaggaaaatcatccatggaggtgaatgatcaacatcaaccgatatcggtatcagactcatttcagttgacaactttgcttatgttgttaccaggg |
39389872 |
T |
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| Q |
419 |
ttgatcttgcttctagttctacttttgcttatgtatcttacacaaaaagtttcttttctgcaatagtccttt |
490 |
Q |
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| T |
39389873 |
ttgatcttgcttctagttctacttttgcttatgtatcttacacaaaaagtttcttttctgcaatagtccttt |
39389944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 425 - 469
Target Start/End: Original strand, 39389965 - 39390009
Alignment:
| Q |
425 |
ttgcttctagttctacttttgcttatgtatcttacacaaaaagtt |
469 |
Q |
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| T |
39389965 |
ttgcttcttgttctacttttgcttatgtatcttacacaaaaagtt |
39390009 |
T |
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