View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8934_low_6 (Length: 493)
Name: NF8934_low_6
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 8399709 - 8399902
Alignment:
| Q |
285 |
tgccaccattagatttaatatgttgaattacgtaggagcacctgtcaaactaaattactttacattatatttgacatcttggttacccatggcacaataa |
384 |
Q |
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| T |
8399709 |
tgccaccattagatttaatatgttgaattacgtaggagcacctgtcaaactaaattactttacattatatttgacatcttggttacccatggcacaataa |
8399808 |
T |
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| Q |
385 |
taaaacttgctaaacaaagtaagtataactaactatagtatttatannnnnnngaatgtgaaatacctaccacgagaaaggaaatcccttttat |
478 |
Q |
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| T |
8399809 |
taaaacttgctaaacaaagtaagtataactaactatagtatttatatttttttgaatgtgaaatacctaccacgagaaaggaaatcccttttat |
8399902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8399423 - 8399644
Alignment:
| Q |
1 |
ttttgaaactaagcatagacattattgaaaaacaaacaagtgtttacaatccttaaggcgttgcnnnnnnntatgatttgagtagctgagctgagcgtta |
100 |
Q |
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| T |
8399423 |
ttttgaaactaagtatagacattattgaaaaacaaacaagtgtttaaaagccttaagtcgttgcagaaaaatatgatttgagtagctgagctgagcgtta |
8399522 |
T |
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| Q |
101 |
acttaaacgtgttttactctgaatttccacaacgaaataaggatggtaatttcgtttacatccttgac--annnnnnnnngacgtatacatgttgtctat |
198 |
Q |
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| T |
8399523 |
acttaaacgtgttttactctgaatttccacaacgaaataaggatggtaatttcgtttacatccttgacatatttttttttgacgtatacatgttgtctat |
8399622 |
T |
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| Q |
199 |
ttgtttattgaacaacgtagac |
220 |
Q |
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| T |
8399623 |
ttgtttattgaacaacgtagac |
8399644 |
T |
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