View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8934_low_9 (Length: 489)
Name: NF8934_low_9
Description: NF8934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8934_low_9 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 16908996 - 16908527
Alignment:
| Q |
1 |
gataaagctggtagaggacatggtaaagaagaagatgaagaagaaggggtgcttaagtggcttgattcaaagaaagatgattctgttctctatgttagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
16908996 |
gataaagctggtagaggacatggtaaagaagaagatgaagaagaaggggtgcttaagtggcttgattcaaagaaatatgattctgttctttatgttagtt |
16908897 |
T |
|
| Q |
101 |
ttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaatcga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
16908896 |
ttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttaggaaaatcga |
16908797 |
T |
|
| Q |
201 |
agatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccacagctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16908796 |
agatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaagaaagaaacaaaggctatttgatatggggttgggcaccacagctt |
16908697 |
T |
|
| Q |
301 |
ctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagtgtaaatgcaggtttaccattggctacttggc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16908696 |
ctgatactagagcatggtgcagttggagctgttgtgactcattgtgggtggaacactattatggaaagtgtaaatgcaggtttaccattggctacttggc |
16908597 |
T |
|
| Q |
401 |
cattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttgg |
470 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
16908596 |
cattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagttgg |
16908527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 14869669 - 14870132
Alignment:
| Q |
1 |
gataaagctggtagaggacatggtaaagaagaagatgaagaagaaggggtgcttaagtggcttgattcaaagaaagatgattctgttctctatgttagtt |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
14869669 |
gataaagcgggtagagggcatggtaaagaagaagatgaagatgaaggagtgcttaagtggcttgattctaagaaagatgattctgttctctatgttagtt |
14869768 |
T |
|
| Q |
101 |
ttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaatcga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
14869769 |
ttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttaggaaaattga |
14869868 |
T |
|
| Q |
201 |
agatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccacagctt |
300 |
Q |
| |
|
||||| ||||| |||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
14869869 |
agatgttgaagatggtgat------ttttttacggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacaactg |
14869962 |
T |
|
| Q |
301 |
ctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagtgtaaatgcaggtttaccattggctacttggc |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
14869963 |
ctgatactagagcatgctgcagttggagcagtggtgactcactgtggctggaacactattatggaaagtgtaaatgcaggtttgtcattggcaacttggc |
14870062 |
T |
|
| Q |
401 |
cattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttgg |
470 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14870063 |
cattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagttgg |
14870132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 461
Target Start/End: Complemental strand, 5995166 - 5994783
Alignment:
| Q |
75 |
agatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgat |
174 |
Q |
| |
|
||||| ||||||| | ||||| |||||||| || ||||| || || ||| | |||| | |||||||| || |||||||||||| |||| || ||| || |
|
|
| T |
5995166 |
agatggttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaaaattcaggtcataat |
5995067 |
T |
|
| Q |
175 |
ttcatttgggttgttagaaaaatcgaagatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaaggctatt |
274 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| |||| || | ||| |||| ||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
5995066 |
ttcatttgggttgttagaaaaaatgaagaaaatgaagaaggtggtgtt--tttcttgaa-gagtttgagaagaaaatgaaagaaagtggaaaaggctatt |
5994970 |
T |
|
| Q |
275 |
tgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagtgtaaa |
374 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||| ||| || |||| |||||| | |||| ||||||||| ||||||||| || | |||||||| || |
|
|
| T |
5994969 |
tgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaa |
5994870 |
T |
|
| Q |
375 |
tgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgt |
461 |
Q |
| |
|
|| || |||||| | || ||||| |||||||||||||| ||||||||||||| | | | ||||||||||| || |||||||| |
|
|
| T |
5994869 |
tgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgt |
5994783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 17572779 - 17572660
Alignment:
| Q |
70 |
aagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggcc |
169 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| ||| | ||||||||||| || ||||||| ||||||||||||||||||||||| ||| ||| |
|
|
| T |
17572779 |
aagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctcatgcacttgaaacttcaagcc |
17572680 |
T |
|
| Q |
170 |
atgatttcatttgggttgtt |
189 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17572679 |
atgatttcatttgggttgtt |
17572660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 296
Target Start/End: Original strand, 17619933 - 17620159
Alignment:
| Q |
70 |
aagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggcc |
169 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||| ||| | ||||||||||| | ||||||| |||||||||||||||||||||||| ||| ||| |
|
|
| T |
17619933 |
aagaaagagaattctgttatctatgtaagttttggcagcttaaacaagttcccaccatctcaactcattgaaatagctcatgcacttgaagcttcaagcc |
17620032 |
T |
|
| Q |
170 |
atgatttcatttgggttgttag-aaaaatcgaagatgccgaagacggtgatgatggttttttgagtgagtttgagaagagaatgaaggaaagaaacaaag |
268 |
Q |
| |
|
|| ||||||||||||||||| | || ||| | ||| |||| |||||||| |||||| || ||||||||||| |||||||| |||| ||||| | |
|
|
| T |
17620033 |
ataatttcatttgggttgttcgtaagaatatta-atgaaaaagaaggtgatgaaggttttatggaggagtttgagaaaagaatgaaagaaaacaacaagg |
17620131 |
T |
|
| Q |
269 |
gctatttgatatggggttgggcaccaca |
296 |
Q |
| |
|
| |||||||||||||||||||| ||||| |
|
|
| T |
17620132 |
gttatttgatatggggttgggccccaca |
17620159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 14710396 - 14710257
Alignment:
| Q |
50 |
tgcttaagtggcttgattcaaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctca |
149 |
Q |
| |
|
||||||| |||||| | || |||||||| |||||||||||||| | |||||||| ||| | ||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
14710396 |
tgcttaaatggcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctca |
14710297 |
T |
|
| Q |
150 |
tgcacttgaagattctggccatgatttcatttgggttgtt |
189 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
14710296 |
tgcacttgaagcttcaagccatgatttcatttgggttgtt |
14710257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 306
Target Start/End: Original strand, 26204405 - 26204570
Alignment:
| Q |
138 |
tgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaatcgaagatgccgaagacggtgatgatggttttttgagtgag |
237 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||| |||||||||||||||||||| ||| | ||| || || ||||| || |||||| ||| || |
|
|
| T |
26204405 |
tgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttagagaaa---aggataaagatgatggtgaagaaggttttctgatagat |
26204501 |
T |
|
| Q |
238 |
tttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccacagcttctgata |
306 |
Q |
| |
|
|||||||| || ||||| ||||| || || |||||| | |||||| |||||| ||||||||||||||| |
|
|
| T |
26204502 |
tttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctgata |
26204570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 26260388 - 26260450
Alignment:
| Q |
134 |
ttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaa |
196 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| || ||| ||||||||||||||||||| |||| |
|
|
| T |
26260388 |
ttgttgaaatagctcatggacttgaaaattcaggtcataatttcatttgggttgttaggaaaa |
26260450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 26224043 - 26224097
Alignment:
| Q |
138 |
tgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttaga |
192 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
26224043 |
tgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttaga |
26224097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 14710217 - 14710156
Alignment:
| Q |
235 |
gagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccaca |
296 |
Q |
| |
|
|||||||| |||||| |||| ||||| || || || |||||||||||||||||||||||||| |
|
|
| T |
14710217 |
gagtttgaaaagagagtgaaagaaagcaataagggttatttgatatggggttgggcaccaca |
14710156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 26227488 - 26227550
Alignment:
| Q |
134 |
ttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttagaaaaa |
196 |
Q |
| |
|
|||| ||||||||||||| |||||| |||| || ||| ||||||||||||||||||| |||| |
|
|
| T |
26227488 |
ttgtagaaatagctcatggtcttgaaaattcaggtcataatttcatttgggttgttaggaaaa |
26227550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 12613434 - 12613541
Alignment:
| Q |
53 |
ttaagtggcttgattcaaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatgc |
152 |
Q |
| |
|
|||| |||||| |||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
12613434 |
ttaaatggcttaattccaagaaagagaattctgttctctatgtaagttttggtagcatgaacaagttcccatcatctcaactcattgaaatagctcatgc |
12613533 |
T |
|
| Q |
153 |
acttgaag |
160 |
Q |
| |
|
|||||||| |
|
|
| T |
12613534 |
acttgaag |
12613541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 12613610 - 12613671
Alignment:
| Q |
235 |
gagtttgagaagagaatgaaggaaagaaacaaaggctatttgatatggggttgggcaccaca |
296 |
Q |
| |
|
||||||||||| ||| |||| ||||| || || || |||||||||||||||||||||||||| |
|
|
| T |
12613610 |
gagtttgagaaaagagtgaaagaaagcaataagggttatttgatatggggttgggcaccaca |
12613671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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