View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8935_high_6 (Length: 277)
Name: NF8935_high_6
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 25005323 - 25005216
Alignment:
| Q |
126 |
taatgtactaatgtgtgatacataatacagttttcattatttatatgctaattaatggcctcattttaaattattcccacaactaaactcatcatccttc |
225 |
Q |
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| T |
25005323 |
taatgtactaatgtgtgatacataatacagttttcattatttatatgctaattaatggcctcattttaaattattcccacaact-aactcatcttccttc |
25005225 |
T |
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| Q |
226 |
aacattatt |
234 |
Q |
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| T |
25005224 |
aacattatt |
25005216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 25005460 - 25005363
Alignment:
| Q |
20 |
ttttattcttgtttattttggcgatgtattggtcgactgatcatttgagatatatgtatactcgactataaagtacaacattaaatgagaactaaactaa |
119 |
Q |
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| T |
25005460 |
ttttaatcttgtttattttggcgatgtattggtcgactgatcttttgagatata--tatactcgactataaagtacaacattaaatgagtactaaactaa |
25005363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 26447220 - 26447311
Alignment:
| Q |
161 |
attatttatatgctaattaatggcctcattttaaattattcccacaactaaactcatcatccttcaacattattatactcttttgcaatttt |
252 |
Q |
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| T |
26447220 |
attattgatatgctaattaatcacttcatattatattattcccacaactaacttcatcatcgttcaaaatcattattctcttttacaatttt |
26447311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 26422185 - 26422292
Alignment:
| Q |
147 |
ataatacagttttcattatttatatgctaattaatggcctcattttaaattattcccacaactaaactca-tcatccttcaacattattatactcttttg |
245 |
Q |
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| T |
26422185 |
ataatatagtttccatttttgatatgctaattaatcacctcatattaagttattcccacaaccaacatcattcatcctttaaaatcatttttctcatttg |
26422284 |
T |
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| Q |
246 |
caattttg |
253 |
Q |
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|||||||| |
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| T |
26422285 |
caattttg |
26422292 |
T |
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