View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8935_low_1 (Length: 885)
Name: NF8935_low_1
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 747
Target Start/End: Original strand, 25098104 - 25098850
Alignment:
| Q |
1 |
gatgaatatctttttggcacaaaagaaaaattgatgatgtcgtgcacaatgtattgtgtaggatgagaacagcaccagcatttgttgcattttgtgaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25098104 |
gatgaatatctttttggcacaaaagaaaaattgatgatgtcgtgcacaatgtattgtgtaggatgagaacagcaccagcatttgttgcattttgtgaaca |
25098203 |
T |
|
| Q |
101 |
agtggtatttaaatggaagaacatttaacaacttccaagcgacaaaatatttttgttttcttttgtttcccccaataagtgaatgcatgaactgcacaac |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25098204 |
agtgctatttaaatggaagaacatttaacaacttccaagcgacaaaatatttttgttttcttttgtttcccccaataagtgaatgcatgaactgcacaac |
25098303 |
T |
|
| Q |
201 |
acaatgtgatgaacaatattatatttacagagaatatatgacaaaagcctcacttccaaaatcattacattaatcaacctgcccttctaatggaaaagaa |
300 |
Q |
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| T |
25098304 |
acaatgtgatgaacaatattatatttacagagaatatatgacaaaagcctcacttccaaaaacattacattaatcaacttgcccttctaatggaaaagaa |
25098403 |
T |
|
| Q |
301 |
aagtaataattggattgttgcccccacttgtttttaagaagccaaagatatataagaaatgaggagacca-ttatattagaaaggnnnnnnnnattgtcg |
399 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |||||| || |||| |
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| T |
25098404 |
aagtaataattggattattgcccccacttttttttaagaagccaaagatatatcagaaatgaggagaccatttatatcagaaagattttttttatcgtcg |
25098503 |
T |
|
| Q |
400 |
ccatttataaacacttgttcaaatcatctcacaaatattagaagagagtctaatatcatcttaaagtttatgattatgtctaacacaactctacaaatcg |
499 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
25098504 |
tcatttataaacacttgttcgaatcatctcataaatattagaagagagtctaatatcatcttaaattttatgattatgtctaacacaattctacaaatcg |
25098603 |
T |
|
| Q |
500 |
atttgtaaaccaggatgtcactctttgtaaactcttacaaagagttgtatctttttaatgtgtaacatatgtttttcctaataaatctcttcacggtcca |
599 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||| |||||||||||||||| |
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| T |
25098604 |
atttgtagaccaggatgttactctttgtaaactcttacaaagagctgtatcttttctatgtgtaacatgtgtttttcccaatacatctcttcacggtcca |
25098703 |
T |
|
| Q |
600 |
ttactattggatttgatgtgtgtacataaacgatgggtgatccgatctatagactcttatatcatgttagattttggtctaacttatcctctcaaaactt |
699 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25098704 |
ttactattgaatttgatgtgtgtacataaacgatgggtgatccgatctataggctcttatatcatgttagattatggtctaacttatcctctcaaaactt |
25098803 |
T |
|
| Q |
700 |
actcgacatatataaaccatgcttaaaaattgagaaataagtaaaaac |
747 |
Q |
| |
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|||||||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
25098804 |
actcgacatatataca-catgcttgaaaattgagaaataagtaaaaac |
25098850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 750 - 870
Target Start/End: Original strand, 25099348 - 25099467
Alignment:
| Q |
750 |
aaatatatttaacccttttattaattatgttaaatgagtttccatgtcacttttaacggatgcacgttgatcattaccaacacatgcacattcatcctta |
849 |
Q |
| |
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||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25099348 |
aaatatatttaacacttttattaattatgttaa-tgagtctccatgtcacttttaacggatgcacgttgatcattaccaacacatgcacattcatcctta |
25099446 |
T |
|
| Q |
850 |
tcaactcttcctcgagatttt |
870 |
Q |
| |
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| T |
25099447 |
tcaactcttcctcgagatttt |
25099467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 508
Target Start/End: Complemental strand, 5608984 - 5608923
Alignment:
| Q |
448 |
tctaatatcatcttaaagtttatgattatgtctaacacaactctac-aaatcgatttgtaaa |
508 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||||| | || |||| |||||||||| |
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| T |
5608984 |
tctaatatcatcttaaaaattatggttatgtctaacacaaccccacaaaattgatttgtaaa |
5608923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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