View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8935_low_10 (Length: 492)
Name: NF8935_low_10
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 88 - 421
Target Start/End: Complemental strand, 2373773 - 2373446
Alignment:
| Q |
88 |
tttctttttctaacaacttcttgtcttgttcttcccaccaacgatccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
187 |
Q |
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|||||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2373773 |
tttcttcttctaaaaacttcttgtcttcttcttcccaccaacgctccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
2373674 |
T |
|
| Q |
188 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcaccttggcgtctcttttctatcttatcatccacatctgaatctgactctggg |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2373673 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcactttggcgtctcttttctatcttatcatccacatctgaatctgagtctggg |
2373574 |
T |
|
| Q |
288 |
taaatcaaatattcagagtccgccctggccttggcatcggactcagactcagactcagactcagaatcagaatcagaatccacctccttgactaattcat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2373573 |
taaatcaaatattcagagtccgccctggccttggcatcggactcagactcagactcagactcagaatcag------aatccacctccttgactaattcat |
2373480 |
T |
|
| Q |
388 |
cctttacggtactggaggttgccccaattgtgtc |
421 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |
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| T |
2373479 |
cctttacggtactggaggttgccccgattgtgtc |
2373446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 88 - 421
Target Start/End: Original strand, 2382298 - 2382625
Alignment:
| Q |
88 |
tttctttttctaacaacttcttgtcttgttcttcccaccaacgatccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
187 |
Q |
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|||||| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382298 |
tttcttcttctaaaaacttcttgtcttcttcttcccaccaacgctccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
2382397 |
T |
|
| Q |
188 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcaccttggcgtctcttttctatcttatcatccacatctgaatctgactctggg |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2382398 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcactttggcgtctcttttctatcttatcatccacatctgaatctgagtctggg |
2382497 |
T |
|
| Q |
288 |
taaatcaaatattcagagtccgccctggccttggcatcggactcagactcagactcagactcagaatcagaatcagaatccacctccttgactaattcat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2382498 |
taaatcaaatattcagagtccgccctggccttggcatcggactcagactcagactcagac------tcagaatcagaatccacctccttgactaattcat |
2382591 |
T |
|
| Q |
388 |
cctttacggtactggaggttgccccaattgtgtc |
421 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
2382592 |
cctttacggtactggaggttgccccgattgtgtc |
2382625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 88 - 418
Target Start/End: Original strand, 2839534 - 2839864
Alignment:
| Q |
88 |
tttctttttctaacaacttcttgtcttgttcttcccaccaacgatccatctcagcacagaacttctcctcataattcttaaagaagatactcatgcgttg |
187 |
Q |
| |
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|||||| ||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
2839534 |
tttcttcttcaaaaaacttcttgtcttcttcttcccaccaacgctccatctcagcacagaacttctcctcataatccttaaagatgatactcatgcgttg |
2839633 |
T |
|
| Q |
188 |
ttcttcaaatttggcagaatttctcctcctacgaatttcaaaaagttcaccttggcgtctcttttctatcttatcatccacatctgaatctgactctggg |
287 |
Q |
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||| |||| || ||||| | |||| ||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839634 |
ttcatcaatttcggcagcacgtctcttcctaagaatttcaaaacggtcactttggcgtctcttttctatcttatcatccacatctgaatctgactctggg |
2839733 |
T |
|
| Q |
288 |
taaatcaaatattcagagtccgccctggccttggcatcggactcagactcagactcagactcagaatcagaatcagaatccacctccttgactaattcat |
387 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
2839734 |
taaatcaaatattcagagtcctccctggccttggcatcggactcagactcagaatcagaatcagaatcagaatcagaatctacctccttgactaattcat |
2839833 |
T |
|
| Q |
388 |
cctttacggtactggaggttgccccaattgt |
418 |
Q |
| |
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||||||| ||||||||||||||||| ||||| |
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| T |
2839834 |
cctttactgtactggaggttgccccgattgt |
2839864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 2839926 - 2839963
Alignment:
| Q |
435 |
agggttagggttgagaagtgttgaattccaaggttaga |
472 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
2839926 |
agggttagggttgagaagggttgaattccaaggttaga |
2839963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 424
Target Start/End: Original strand, 1526294 - 1526376
Alignment:
| Q |
342 |
tcagactcagaatcagaatcagaatccacctccttgactaattcatcctttacggtactggaggttgccccaattgtgtcgtc |
424 |
Q |
| |
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||||||||||||||||| || ||| ||||||||||||||| |||||| |||||||||| ||||||| ||||||||||| |
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| T |
1526294 |
tcagactcagaatcagactccacctccgtctccttgactaattcctcctttgtggtactggagtttgcccctattgtgtcgtc |
1526376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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