View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8935_low_12 (Length: 396)
Name: NF8935_low_12
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 25039224 - 25038842
Alignment:
| Q |
1 |
aaatattacaacaacctgatcaatgaactacttgataatggtaatgcatattcatgaaattcataannnnnnnactaaatgatataatcatggtaatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
25039224 |
aaatattacaacaacctgatcaatgaactacttgataatggtaatgcatattcatgaaattcataatttttttactaaatgatataatcatagtaatata |
25039125 |
T |
|
| Q |
101 |
aattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagc |
200 |
Q |
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| T |
25039124 |
aattgatggacttattgatccaggtctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagc |
25039025 |
T |
|
| Q |
201 |
cctaatattatgtaagttgcatggcgcaaattttcattcaagcaataataatatatcgatggctacttatataaattgaatttttatttaacagcgttaa |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25039024 |
cctaatattatgtaagttgcatggtgcaaattttcattcaagcaataataatatatcgatggctacttatataaattgaatttttatttaacagcgttaa |
25038925 |
T |
|
| Q |
301 |
tttatatgagcacgatccatgatagagctttatgaagtcgattgaaatatgtattttatatggtttcattgctgatgtttttg |
383 |
Q |
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| T |
25038924 |
tttatatgagcacgatccatgatagagctttatgacgtcgattgaaatatgtattttatatggtttcattgctgatgtttttg |
25038842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 84 - 266
Target Start/End: Complemental strand, 25017990 - 25017806
Alignment:
| Q |
84 |
ataatcatggtaatataaattgatggacttattg--atccagatctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacga |
181 |
Q |
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| T |
25017990 |
ataataatagtaatataaattgatggaattattggtatataggtctggtaccatttgtgaccctttttcactgggatcttccccaagccctacaagacga |
25017891 |
T |
|
| Q |
182 |
gtacagcggtttcttaagccctaatattatgtaagttgcatggcgcaaattttcattcaagcaataataatatatcgatggctac |
266 |
Q |
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|||||| || |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||| |
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| T |
25017890 |
gtacagtggcttcttaagcccttatattatgtaagttgcatgacacaaattttcattcaagcaataataataaatcgatcgctac |
25017806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 4624804 - 4624732
Alignment:
| Q |
94 |
taatataaattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttcccca |
166 |
Q |
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||||||||||||||||| |||||||||||| || |||||| |||||||||||| ||||||||||||||||| |
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| T |
4624804 |
taatataaattgatggaattattgatccaggtcaaataccatatgtgaccctttttcattgggatcttcccca |
4624732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25018110 - 25018061
Alignment:
| Q |
1 |
aaatattacaacaacctgatcaatgaactacttgataatggtaatgcata |
50 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
25018110 |
aaatattacaacaatctgatcaatgagctacttgataatggtaatgcata |
25018061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 4600477 - 4600386
Alignment:
| Q |
94 |
taatataaattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacgagtac |
185 |
Q |
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||||||||||||||||| |||||||||||| || |||||| ||| |||||||| ||||||||||| ||| | | |||||||| |||||| |
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| T |
4600477 |
taatataaattgatggaattattgatccaggtcaaataccatatgtaaccctttttcattgggatctgcccaacatcttacaagaggagtac |
4600386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 25189571 - 25189515
Alignment:
| Q |
144 |
cttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagc |
200 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||| | |||||||||||| |
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|
| T |
25189571 |
ctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagc |
25189515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 4624899 - 4624855
Alignment:
| Q |
6 |
ttacaacaacctgatcaatgaactacttgataatggtaatgcata |
50 |
Q |
| |
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|||||| ||||||||| |||| ||||||| ||||||||||||||| |
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| T |
4624899 |
ttacaagaacctgatctatgagctacttgctaatggtaatgcata |
4624855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 18803840 - 18803922
Alignment:
| Q |
84 |
ataatcatggtaatataaattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttcccca |
166 |
Q |
| |
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|||||||| |||||||||||||| || |||||||||||| ||| ||||||| |||||||||||| |||| |||| ||||||| |
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| T |
18803840 |
ataatcatagtaatataaattgactgagttattgatccaggtctagtaccatatgtgaccctttttcattcggattttcccca |
18803922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 18803755 - 18803799
Alignment:
| Q |
6 |
ttacaacaacctgatcaatgaactacttgataatggtaatgcata |
50 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18803755 |
ttacaacaacctgatcaatgagctacttgataatggtaatgcata |
18803799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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