View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8935_low_13 (Length: 383)
Name: NF8935_low_13
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 46750004 - 46749719
Alignment:
| Q |
14 |
acctgtggtatgatatggtatgaaaa-tgtaatataaagtatttaggtcacattgaaaatataggacttgtaataagagtttataaagagagtcattgtt |
112 |
Q |
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| T |
46750004 |
acctgtggtatggtatggtatgaaaaatgtaatataaagtatttaggtcacattgaaaatataggatttgtaataagagtttataaagagagtcattgtt |
46749905 |
T |
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| Q |
113 |
caccttacaatttaagttttataaggttgagttaggtcaaatataaaatctaagatgatattagagtctatcgatttgagtcacctatatattcatgtat |
212 |
Q |
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| T |
46749904 |
caccttacaatttaggttttgtaaggttgagttagatcaaatataaaatctaagatgatattagagtctatcgatttgagtcacctatatattcatgtat |
46749805 |
T |
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| Q |
213 |
caaactcagtagtattgaacataatggagcgtatttggaaaaactcaaatctcacattgaaaagagaggtacatcttaccttacaa |
298 |
Q |
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| T |
46749804 |
caaactcaatagtattgaacgtaatggagtgtatttgaaaaaactcaaatctcacattgaaaagagaggtaaatcttaccttacaa |
46749719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 46749694 - 46749624
Alignment:
| Q |
297 |
aatcagattttaacatattattagaatttgggttaacacctaatgtgagactttaattttctccatacaca |
367 |
Q |
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| T |
46749694 |
aatcagattttaacatattattagaatttgggttaacacctaacgtgagactttaattttctccatacaca |
46749624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 20726864 - 20726813
Alignment:
| Q |
127 |
agttttataaggttgagttaggtcaaatataaaatctaagatgatattagag |
178 |
Q |
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| T |
20726864 |
agttttataaggatgagttaggcccaatataaaatctaagatggtatcagag |
20726813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 30790826 - 30790864
Alignment:
| Q |
135 |
aaggttgagttaggtcaaatataaaatctaagatgatat |
173 |
Q |
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| T |
30790826 |
aaggttgagttaggccaaatctaaaatctaagatgatat |
30790864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 44278523 - 44278578
Alignment:
| Q |
128 |
gttttataaggttgagttaggtcaaatataaaatctaagatgatattagagtctat |
183 |
Q |
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| T |
44278523 |
gttttgtaaggttgagttaggttaaatataaaacctaatatgatatcagagcctat |
44278578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 16212371 - 16212343
Alignment:
| Q |
250 |
gaaaaactcaaatctcacattgaaaagag |
278 |
Q |
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| T |
16212371 |
gaaaaactcaaatctcacattgaaaagag |
16212343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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