View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8935_low_20 (Length: 266)
Name: NF8935_low_20
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 42141721 - 42141966
Alignment:
| Q |
1 |
attcaattattctcttcaactacctataatatttaatagcctcccaaagttgtgactaatgctactacataattccaactatacattaaacac--tagtt |
98 |
Q |
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| T |
42141721 |
attcaattattctcttcaactacctataatatttaatagcctcccaaagttgtgactaatgctactacataattccaactatacattaaacacactagtt |
42141820 |
T |
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| Q |
99 |
actcatattaataatctagtaatctatagtatagtatgtaataaaattcagtaagacaaacacatgtatagggtgtgcaaattatatagcataggtacag |
198 |
Q |
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|||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42141821 |
actcatattaataatcta-tagt--atagtatagtatgtaataaaattcagtaagacaaacacatgtatagggtgtgcaaattgtatagcataggtacag |
42141917 |
T |
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| Q |
199 |
aaaaaggaaagcctatttttgccttacatattatagacctcacagaact |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42141918 |
aaaaaggaaagcctatttttgccttacatattatagacctcacagaact |
42141966 |
T |
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