View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8935_low_25 (Length: 246)

Name: NF8935_low_25
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8935_low_25
NF8935_low_25
[»] chr4 (2 HSPs)
chr4 (36-175)||(38849213-38849352)
chr4 (172-230)||(38849134-38849192)
[»] chr8 (11 HSPs)
chr8 (58-228)||(38317999-38318170)
chr8 (58-143)||(38314587-38314672)
chr8 (76-174)||(38322103-38322198)
chr8 (74-142)||(38307253-38307321)
chr8 (180-228)||(38323022-38323070)
chr8 (180-226)||(38301492-38301538)
chr8 (65-163)||(38326810-38326908)
chr8 (182-221)||(38326939-38326978)
chr8 (74-103)||(38301359-38301388)
chr8 (179-216)||(38307380-38307417)
chr8 (180-228)||(38322229-38322277)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 38849352 - 38849213
Alignment:
Q  36 attgtattgttttgatagggtaaattttgttattaagttcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatg 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||    
T  38849352 attgtattgttttgatagggtaaattttgttattaagttcttcaattatgatatgtagatggagaagacgatgacgacgactttgaagaaataaagaatg 38849253  T
Q  136 aaattgacaatgatgaaaaaatggagcaagcttctaatga 175  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  38849252 aaattgataatgatgaaaaaatggagcaagcttctaatga 38849213  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 38849192 - 38849134
Alignment:
Q  172 atgatgtcgatgatgattgatttgcttgtatttatttaactttggtttatcatgtttat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38849192 atgatgtcgatgatgattgatttgcttgtatttatttaactttggtttatcatgtttat 38849134  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 38317999 - 38318170
Alignment:
Q  58 aattttgttattaagttcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattgacaatgatgaaaaaat 157  Q
    |||||| |||||||  ||||||||| |||||||||||  ||||||  ||||  || ||||| || | ||||| |||||||||||| |||| |||||||||    
T  38317999 aattttattattaacctcttcaattgtgatatgtagacagagaaggcgacagagatgacttggatggaataatgaatgaaattgataatggtgaaaaaat 38318098  T
Q  158 ggagcaagcttct-aatgatgtcgatgatgattgatttgcttgtatttatttaactttggtttatcatgttt 228  Q
    || |||||| |   ||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  38318099 ggtgcaagcgtgacaatgatggcggtgatgattgatttgcttgtagttatttaactttgatttatcatgttt 38318170  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 38314587 - 38314672
Alignment:
Q  58 aattttgttattaagttcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattgac 143  Q
    ||||| ||||||||  ||||| |||||||||||||||||||||||| ||| | || |||||||||||||||| |||||||||||||    
T  38314587 aatttagttattaatctcttcgattatgatatgtagatggagaagacgacgacgatgactttgaagaaataatgaatgaaattgac 38314672  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 38322103 - 38322198
Alignment:
Q  76 ttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattgacaatgatgaaaaaatggagcaagcttctaatg 174  Q
    |||||||||||||||||| ||||||||| ||| |||||   ||||||||||||| |||||||| ||||| ||||||  ||||||||||||| |||||||    
T  38322103 ttcaattatgatatgtagttggagaagacgacgatgac---tttgaagaaataatgaatgaaactgacagtgatgactaaatggagcaagcatctaatg 38322198  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 38307253 - 38307321
Alignment:
Q  74 tcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattga 142  Q
    |||||||||||||| |||||||||| |||| ||  | ||||||||||||||||||| ||||||||||||    
T  38307253 tcttcaattatgatttgtagatggaaaagacgatgaagacgactttgaagaaataatgaatgaaattga 38307321  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 38323022 - 38323070
Alignment:
Q  180 gatgatgattgatttgcttgtatttatttaactttggtttatcatgttt 228  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  38323022 gatgatgattgatttgcttgtatttacttaactttggtttatgatgttt 38323070  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 38301492 - 38301538
Alignment:
Q  180 gatgatgattgatttgcttgtatttatttaactttggtttatcatgt 226  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  38301492 gatgatgattgatttgcttgtatctatttaactttggtttataatgt 38301538  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 38326810 - 38326908
Alignment:
Q  65 ttattaagttcttcaattatgatatgtagatggagaagaagacaatgacgactttgaagaaataaagaatgaaattgacaatgatgaaaaaatggagca 163  Q
    |||||||  ||||||||| ||||||||||||| ||| || ||| |||| |||||||||||||  | ||| |||||||||   |||||||||||||||||    
T  38326810 ttattaacctcttcaattttgatatgtagatgaagaggatgacgatgatgactttgaagaaactatgaacgaaattgacggcgatgaaaaaatggagca 38326908  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 38326939 - 38326978
Alignment:
Q  182 tgatgattgatttgcttgtatttatttaactttggtttat 221  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  38326939 tgatgattgatttgcttgtatttatttaactttagtttat 38326978  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 38301359 - 38301388
Alignment:
Q  74 tcttcaattatgatatgtagatggagaaga 103  Q
    ||||||||||||||||||||||||||||||    
T  38301359 tcttcaattatgatatgtagatggagaaga 38301388  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 38307380 - 38307417
Alignment:
Q  179 cgatgatgattgatttgcttgtatttatttaactttgg 216  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  38307380 cgatgatgatttatttgcttctatttatttaactttgg 38307417  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 38322229 - 38322277
Alignment:
Q  180 gatgatgattgatttgcttgtatttatttaactttggtttatcatgttt 228  Q
    ||||||| ||||||||||||||| ||||||||||  |||||| ||||||    
T  38322229 gatgatggttgatttgcttgtatctatttaacttctgtttatgatgttt 38322277  T

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