View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8935_low_3 (Length: 821)

Name: NF8935_low_3
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8935_low_3
NF8935_low_3
[»] chr2 (8 HSPs)
chr2 (374-803)||(21835512-21835945)
chr2 (140-258)||(24741621-24741738)
chr2 (18-93)||(24741513-24741588)
chr2 (283-364)||(24741772-24741853)
chr2 (316-364)||(4479702-4479750)
chr2 (316-364)||(14573261-14573309)
chr2 (316-365)||(14573999-14574048)
chr2 (316-365)||(21471016-21471065)
[»] chr3 (9 HSPs)
chr3 (154-364)||(32996801-32997014)
chr3 (15-96)||(32996678-32996759)
chr3 (196-264)||(5354405-5354473)
chr3 (318-365)||(41755498-41755545)
chr3 (314-364)||(17227946-17227996)
chr3 (316-365)||(36750437-36750486)
chr3 (316-365)||(37105077-37105126)
chr3 (331-364)||(38742189-38742222)
chr3 (316-365)||(44686254-44686302)
[»] chr8 (7 HSPs)
chr8 (181-264)||(25876629-25876712)
chr8 (181-365)||(7424421-7424611)
chr8 (280-365)||(25876520-25876605)
chr8 (316-365)||(34992264-34992313)
chr8 (314-365)||(61453-61504)
chr8 (314-364)||(1365829-1365879)
chr8 (316-365)||(41859309-41859358)
[»] chr4 (14 HSPs)
chr4 (181-263)||(42544596-42544678)
chr4 (280-367)||(42544485-42544572)
chr4 (331-368)||(52757809-52757846)
chr4 (316-364)||(21165447-21165495)
chr4 (316-364)||(25371545-25371593)
chr4 (316-364)||(37275088-37275136)
chr4 (316-364)||(38694954-38695002)
chr4 (316-359)||(3847891-3847934)
chr4 (316-363)||(36864818-36864865)
chr4 (314-365)||(47198604-47198655)
chr4 (314-365)||(55160065-55160115)
chr4 (316-366)||(11417685-11417735)
chr4 (316-366)||(29651332-29651382)
chr4 (316-365)||(26611283-26611332)
[»] chr6 (10 HSPs)
chr6 (18-93)||(24549639-24549714)
chr6 (316-364)||(3543063-3543111)
chr6 (316-364)||(15083318-15083366)
chr6 (316-367)||(7532440-7532491)
chr6 (285-364)||(33078283-33078362)
chr6 (316-362)||(3542816-3542862)
chr6 (316-365)||(7159341-7159390)
chr6 (316-365)||(7193337-7193386)
chr6 (203-264)||(24551481-24551541)
chr6 (283-364)||(24551566-24551647)
[»] chr7 (4 HSPs)
chr7 (316-368)||(37864307-37864359)
chr7 (316-365)||(37468909-37468958)
chr7 (316-365)||(38778853-38778902)
chr7 (316-365)||(41194512-41194561)
[»] chr1 (5 HSPs)
chr1 (316-364)||(193850-193898)
chr1 (316-364)||(49610706-49610754)
chr1 (316-366)||(1012545-1012595)
chr1 (316-365)||(51974436-51974485)
chr1 (316-365)||(51987826-51987875)
[»] chr5 (3 HSPs)
chr5 (316-358)||(4607470-4607512)
chr5 (316-365)||(8204119-8204168)
chr5 (316-365)||(12190158-12190207)
[»] scaffold0311 (1 HSPs)
scaffold0311 (316-365)||(160-209)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 374 - 803
Target Start/End: Complemental strand, 21835945 - 21835512
Alignment:
Q  374 tattgacaacgattcctctataataggaggggtcgtttaatcaagatatgttcatgtattttcggaaggaatcttagattatcaattttcatctcatctt 473  Q
    |||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  21835945 tattgataacgattcctccataataggaggggtccttgaatcaagatatgttcatgtattttcgaaaggaatcttatattatcaattttcatctcatctt 21835846  T
Q  474 tgaaaacttaatcgtataactaagaaggagagg-atttgggataatattcaaaccatagtatatcttaaatcataaatcgaccctaattttcaagcnnnn 572  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||        
T  21835845 tgaaaacttaatcgtataactaagaaggagggggatttgggataatattcaaatcatagtatatcttaaatcataaatagaccctaatttccaagctatt 21835746  T
Q  573 nnnn---atcattgtatatcttaaatcataataaactcttcacactacaaatttttatatttgctaatcaaccttagaaaattaaattaatatacaaca- 668  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || |||||     
T  21835745 tttttttatcattgtatatcttaaatcataataaactcttcacactacaaatttttatatttgctaattaaccttagaaaattaaatta--attcaacat 21835648  T
Q  669 --tagtttttatgggaagatatttttattaagatgatatattcgtgcacttgtgggtgtatcactgtagaagtcttacattgaaaattaggatcatatat 766  Q
      |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||    
T  21835647 agtagtttttatgggacgatatttttattaagatgatatattcgtgcacttgt-ggtgtatcactttaggagtcttacattgaaaattaggatcataaat 21835549  T
Q  767 ctttacaaggattgataagtgtttttatggatgttgg 803  Q
    |||||| ||||||||||||||||||||||||||||||    
T  21835548 ctttacgaggattgataagtgtttttatggatgttgg 21835512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 140 - 258
Target Start/End: Original strand, 24741621 - 24741738
Alignment:
Q  140 tttgatgtacgtgagagaagaagaataatataattt-atgttttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttgg 238  Q
    ||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  24741621 tttgatgtacgtgaga--agaagaagaatataatttcatgttttaatcaatcagttttgtggtgtactgaagaaatggggaggtgcagtagtaagcttgg 24741718  T
Q  239 aaacaaaattaaaataataa 258  Q
    |||||| |||||||||||||    
T  24741719 aaacaacattaaaataataa 24741738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 24741513 - 24741588
Alignment:
Q  18 agaagaagagttgatgttctttgttggaaactgagtattgtacgcgagaagaagaacagttgatgttaagcttttt 93  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  24741513 agaagaatagttgatgttctttgttggaaactgagtattgtacgcgagaagaagtacaattgatgttaagcctttt 24741588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 24741772 - 24741853
Alignment:
Q  283 agttcaaaatcgacaggtgtccttggtaaagagactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||||  ||||||||||||||||||||||  |||  ||||||| ||||||||||||||||||||||||||| ||||||    
T  24741772 agttcaaaactgacaggtgtccttggtaaagaggtttttccatggtgggaaaaaagtcttctttcccaaattaaacggcacc 24741853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 4479702 - 4479750
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||| |||||||||||| || ||| ||||||||||||||||||||||    
T  4479702 actttcccatggtgagaaagaactctcctttcccaaattaaatggcacc 4479750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 14573309 - 14573261
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||| ||||||| ||||||| ||| ||||||||||||||||||||||    
T  14573309 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 14573999 - 14574048
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    ||||||| |||||| |||| || ||| |||||||||||||||||||||||    
T  14573999 actttcttatggtgggaaagaactctcctttcccaaattaaatggcacct 14574048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 21471065 - 21471016
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  21471065 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 21471016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 154 - 364
Target Start/End: Original strand, 32996801 - 32997014
Alignment:
Q  154 gagaagaagaataatataattt-atgttttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaa 252  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||||    
T  32996801 gagaagaagaagaatataatttcatgttttaatcaatcagttttgtggtgtaatggagaaatggggaggtgcagtagtaagcttggaaataacattaaaa 32996900  T
Q  253 taataaattgag-nnnnnnnnnnnnnnngcaagttcaaaatcgacaggtgtccttggtaaagagactttctcatggt-gagaaaaaagtcttctttccca 350  Q
    ||||||| ||||                |||||||||||| ||||| ||||||||||||||||||||||| |||||| || |||||||||||||||| ||    
T  32996901 taataaactgagttttttttttttttttgcaagttcaaaaccgacacgtgtccttggtaaagagactttcccatggtggaaaaaaaagtcttctttctca 32997000  T
Q  351 aattaaatggcacc 364  Q
    ||||||||||||||    
T  32997001 aattaaatggcacc 32997014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 32996678 - 32996759
Alignment:
Q  15 cagagaagaagagttgatgttctttgttggaaactgagtattgtacgcgagaagaagaacagttgatgttaagctttttctg 96  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32996678 cagagaagaagagttgatgttctttgttggaaactgagtattttacgcgagaagaagaacagttgatgttaagctttttctg 32996759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 5354405 - 5354473
Alignment:
Q  196 tgtgctgtactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaataataaattgag 264  Q
    |||| ||||||| |||||| ||||||||||  |||||||||  | |||| |||||||||||||||||||    
T  5354405 tgtggtgtactgaagaaatagggaggtgcaacagtaagcttaaacacaacattaaaataataaattgag 5354473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 41755545 - 41755498
Alignment:
Q  318 tttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  41755545 tttctcatggtgggaaaaaactctcctttcccaaattaaatgacacct 41755498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 17227946 - 17227996
Alignment:
Q  314 agactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    ||||||| |||||||| |||| |||||| ||||||||||||||||| ||||    
T  17227946 agactttttcatggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 36750437 - 36750486
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  36750437 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 36750486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 37105077 - 37105126
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||||||||||  |||||||||||||| |||||||    
T  37105077 actttcccatggtgggaaaaaagtctcgtttcccaaattaaacggcacct 37105126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 364
Target Start/End: Original strand, 38742189 - 38742222
Alignment:
Q  331 gaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||||||||||||||| |||||||||||||    
T  38742189 gaaaaaagtcttctttcccagattaaatggcacc 38742222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 44686302 - 44686254
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    ||||||||||||||| |||||| ||| |||| ||||||||||||||||||    
T  44686302 actttctcatggtga-aaaaaactctccttttccaaattaaatggcacct 44686254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 25876712 - 25876629
Alignment:
Q  181 ttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaataataaattgag 264  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25876712 ttaatcaatcagttttgtggtgtaatggggaaatggggaggtgcagtagtaagcttggaaacaacattaaaataataaattgag 25876629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 181 - 365
Target Start/End: Original strand, 7424421 - 7424611
Alignment:
Q  181 ttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaataataaattgag------nnnnnnnnnn 274  Q
    ||||||||||||||||||| |||| ||  |||||||||||||||||||||||| ||||||| || |||||||||||||||||||                    
T  7424421 ttaatcaatcagttttgtggtgtaatgcggaaatggggaggtgcagtagtaagtttggaaagaacattaaaataataaattgagttttttttgttttttt 7424520  T
Q  275 nnnnngcaagttcaaaatcgacaggtgtccttggtaaagagactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
         ||||||| |||| ||||| ||||||||||||||||||||||| |||||||  |||||||||||||||| |||||||||| ||||||    
T  7424521 tttttgcaagttaaaaaccgacaagtgtccttggtaaagagactttcccatggtggaaaaaaagtcttctttctcaaattaaattgcacct 7424611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 25876605 - 25876520
Alignment:
Q  280 gcaagttcaaaatcgacaggtgtccttggtaaagagactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    ||||||| |||| ||||| || ||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  25876605 gcaagttaaaaaccgacaagtatccttcgtaaagagactttcccatggtgggaaaaaaatcttctttcccaaattaaatggcacct 25876520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 34992264 - 34992313
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| ||||||| ||| |||||||||||||||||||||||    
T  34992264 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacct 34992313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 61504 - 61453
Alignment:
Q  314 agactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||||| ||||||| |||| |||||| ||||||||||||||||| |||||    
T  61504 agactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacct 61453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 1365879 - 1365829
Alignment:
Q  314 agactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||| ||||||| |||| |||||| ||||||||||||||||| ||||    
T  1365879 agactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 41859358 - 41859309
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  41859358 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 41859309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 42544678 - 42544596
Alignment:
Q  181 ttaatcaatcagttttgtgctgtactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaataataaattga 263  Q
    |||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42544678 ttaatcaatcagttttatggtgtaatggggaaatggggaggtgcagtagtaagcttggaaacaacattaaaataataaattga 42544596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 280 - 367
Target Start/End: Complemental strand, 42544572 - 42544485
Alignment:
Q  280 gcaagttcaaaatcgacaggtgtccttggtaaagagactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcaccttt 367  Q
    ||||||| |||| ||||| ||||||||| ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  42544572 gcaagttaaaaaccgacaagtgtccttgataaagagacttttccatggtgggaaaaaagtcttctttcccaaattaaatggcaccttt 42544485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 52757846 - 52757809
Alignment:
Q  331 gaaaaaagtcttctttcccaaattaaatggcaccttta 368  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52757846 gaaaaaagtcttctttcccaaattaaatggcaccttta 52757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 21165495 - 21165447
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||||||||| |||| || | ||||||||||||||||||||||||    
T  21165495 actttctcatggtgggaaagaactattctttcccaaattaaatggcacc 21165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 25371545 - 25371593
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||||||||| |||| |||||| ||||||||||||||||| ||||    
T  25371545 actttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 37275136 - 37275088
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||||||||| |||| |||||| ||||||||||||||| ||||||    
T  37275136 actttctcatggtgggaaagaagtctcctttcccaaattaaacggcacc 37275088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 38694954 - 38695002
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||||||||| |||| || ||| ||||||||||||||||||||||    
T  38694954 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 359
Target Start/End: Complemental strand, 3847934 - 3847891
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatg 359  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||    
T  3847934 actttcccatggtgggaaaaaagtctcctttcccaaattaaatg 3847891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 36864865 - 36864818
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcac 363  Q
    ||||||||||||||||||| || ||| |||||||||||||||| ||||    
T  36864865 actttctcatggtgagaaagaactctcctttcccaaattaaatagcac 36864818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 47198655 - 47198604
Alignment:
Q  314 agactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||||| ||||||| |||| |||||| ||||||||||||||||| |||||    
T  47198655 agactttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacct 47198604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 55160065 - 55160115
Alignment:
Q  314 agactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||| |||||    
T  55160065 agactttcccatggtgagaaaaa-gtctcctttcccaaattaaatgccacct 55160115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 11417735 - 11417685
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacctt 366  Q
    |||||| ||||||| |||| || ||| ||||||||||||||||||||||||    
T  11417735 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacctt 11417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 29651332 - 29651382
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacctt 366  Q
    |||||| ||||||| |||| || ||| ||||||||||||||||||||||||    
T  29651332 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacctt 29651382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 26611283 - 26611332
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| ||||||| ||| ||||||||||||||||| |||||    
T  26611283 actttcccatggtgggaaaaaactctcctttcccaaattaaatgacacct 26611332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 24549639 - 24549714
Alignment:
Q  18 agaagaagagttgatgttctttgttggaaactgagtattgtacgcgagaagaagaacagttgatgttaagcttttt 93  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  24549639 agaagaagagttgatgttctttgttcgaaactgagtagggtacgcgagaagaagaatagttgatgttaagcttttt 24549714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 3543063 - 3543111
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||| ||||||| ||||||| ||| ||||||||||||||||||||||    
T  3543063 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 15083318 - 15083366
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||||||||| |||| || ||| ||||||||||||||||||||||    
T  15083318 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 7532440 - 7532491
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcaccttt 367  Q
    |||||| |||||||| ||| |||||| ||||||||||||||||| |||||||    
T  7532440 actttcccatggtgaaaaagaagtctcctttcccaaattaaatgccaccttt 7532491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 33078283 - 33078362
Alignment:
Q  285 ttcaaaatcgacaggtgtccttggtaaagagactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||  |||||||||||| ||||||| |||| || |||||| | ||||||||||  ||| |||||||||| ||||||    
T  33078283 ttcaaaactgacaggtgtcctgggtaaagggactgtcccatggtaaaaaaaaagtctcattttccaaattaaacggcacc 33078362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 3542862 - 3542816
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggca 362  Q
    |||||| ||||||| ||||||| ||| ||||||||||||||||||||    
T  3542862 actttcccatggtgggaaaaaactctcctttcccaaattaaatggca 3542816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 7159341 - 7159390
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| |||| || ||||||||| | |||||||||||||||||||||||    
T  7159341 actttcccatgatgggaaaaaagtttgctttcccaaattaaatggcacct 7159390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 7193386 - 7193337
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  7193386 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 7193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 24551481 - 24551541
Alignment:
Q  203 tactggagaaatggggaggtgcagtagtaagcttggaaacaaaattaaaataataaattgag 264  Q
    ||||| ||||||| |||| |||| |||||||||| |||| || |||||||||||||||||||    
T  24551481 tactgaagaaatgaggagatgcaatagtaagctt-gaaaaaacattaaaataataaattgag 24551541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 24551566 - 24551647
Alignment:
Q  283 agttcaaaatcgacaggtgtccttggtaaagagactttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||||||||||| |||||| |||||||  ||||| |||| |||  ||||||||||   ||| ||||||||| ||||||    
T  24551566 agttcaaaatcgacagatgtcctgggtaaaggtactttttcatagtggaaaaaaagtctcaattctcaaattaaacggcacc 24551647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 37864307 - 37864359
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcaccttta 368  Q
    |||||| ||||||| |||| || |||| |||||||||||||||||||||||||    
T  37864307 actttcccatggtgggaaagaactcttatttcccaaattaaatggcaccttta 37864359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 37468958 - 37468909
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  37468958 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 37468909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 38778902 - 38778853
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  38778902 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 38778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 41194561 - 41194512
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  41194561 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 41194512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 193898 - 193850
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||||||||||| |||| || ||| ||||||||||||||||||||||    
T  193898 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 49610754 - 49610706
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacc 364  Q
    |||||| ||||| | ||||||||||||||||||||||| ||||||||||    
T  49610754 actttcccatggagggaaaaaagtcttctttcccaaataaaatggcacc 49610706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 1012595 - 1012545
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacctt 366  Q
    |||||| ||||||| ||||||| ||| ||||||||||||||| ||||||||    
T  1012595 actttcccatggtgggaaaaaaatctcctttcccaaattaaacggcacctt 1012545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 51974485 - 51974436
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  51974485 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 51974436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 51987875 - 51987826
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| |||||| ||||||||||||||||| |||||    
T  51987875 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacct 51987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 4607512 - 4607470
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaat 358  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||    
T  4607512 actttcccatggtgggaaaaaagtctactttcccaaattaaat 4607470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 8204168 - 8204119
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  8204168 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 8204119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 12190158 - 12190207
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| ||||||| |||  ||||||||||||||||||||||    
T  12190158 actttcccatggtgggaaaaaactctcttttcccaaattaaatggcacct 12190207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 160 - 209
Alignment:
Q  316 actttctcatggtgagaaaaaagtcttctttcccaaattaaatggcacct 365  Q
    |||||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  160 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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