View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8935_low_4 (Length: 730)

Name: NF8935_low_4
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8935_low_4
NF8935_low_4
[»] chr1 (4 HSPs)
chr1 (74-714)||(39304155-39304810)
chr1 (9-73)||(39304064-39304128)
chr1 (122-165)||(20267873-20267916)
chr1 (135-164)||(35308480-35308509)
[»] chr6 (1 HSPs)
chr6 (116-165)||(29321952-29322001)
[»] chr5 (2 HSPs)
chr5 (116-164)||(16965816-16965864)
chr5 (116-165)||(38503233-38503282)
[»] chr8 (2 HSPs)
chr8 (116-165)||(38064047-38064096)
chr8 (116-165)||(38544901-38544950)
[»] chr3 (5 HSPs)
chr3 (116-165)||(29645803-29645852)
chr3 (116-165)||(31435477-31435526)
chr3 (524-605)||(38227577-38227657)
chr3 (116-165)||(38668198-38668247)
chr3 (116-165)||(50676843-50676892)
[»] chr2 (3 HSPs)
chr2 (135-164)||(6270502-6270531)
chr2 (116-165)||(33482618-33482667)
chr2 (116-165)||(42678300-42678349)


Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 74 - 714
Target Start/End: Original strand, 39304155 - 39304810
Alignment:
Q  74 atttggtaaaaaatctcacgtcatctcttggacnnnnnnnnn--gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtggaggctc 171  Q
    |||||||||||||||||||||||||||||||||           |||| ||||| || || | ||||||||||| ||||||||||||||||||||||  |    
T  39304155 atttggtaaaaaatctcacgtcatctcttggactttttttttttgtcatgtagtttagtgatcagagaaattcatcttaaagataaataagtggaggtcc 39304254  T
Q  172 ctgtacatattgtgcattatcctttacc--------taagctcatggggacaaactcttgaacnnnnnnnatttacctaaaagagtgaagatgacttata 263  Q
    ||| ||||||| |||||||||| |||||        ||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||    
T  39304255 ctgcacatattatgcattatcccttaccaaatgagctaagctcatggggacaaactcttaaactttttttgtttacctaaaagagtgaagatgacttata 39304354  T
Q  264 tggcttgcgtagtcaccatatttatgaattgaattaggacgacgaaaaaagggggtactgttattttgttgta-gtggtttgcatcatattcataattgt 362  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||    
T  39304355 tggcttgcgtagtcaccatatttatgaattgacttaggacgacgaaaaaagtgg-tactgttattttgttgtaagtggtttgcatcatattcataattgt 39304453  T
Q  363 tggtcaaaagagatattgatcaattgtaatgaaggcaacaatcaaaagtcaaatggatttggcagttcacaacatttcatcattcagtgaactggtgt-- 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  39304454 tggtcaaaagagatattgatcaattgtaatgaaggcaacaatcaaaagtcaaatggatttggcagttcacaacatttcatcattcagtgaactggtgtac 39304553  T
Q  461 -----------gcataactcacaaaacaacactgacaagtttttgtttgctagtaccagtggattttctatcagtgacagtaggcatatgcctctttaaa 549  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39304554 aactgtacataacataactcacaaaacaacactgacaagtttttgtttgctagtaccagtggattttctatcagtgacagtaggcatatgcctctttaaa 39304653  T
Q  550 taggtacaagcattgaaaaaatttggttgatgttactttccaagacatagagacaaacttattagtaaccttcctagttataacagtaaggtcaaaatta 649  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39304654 taggtacaagcattgaaaaaatttggttgatgttactttcca--------agacaaacttattagtaaccttcctagttataacagtaaggtcaaaatta 39304745  T
Q  650 caagttacaacaaactaattagtaaggtaacccagctacctagtaataacagcaaggtcaaaaat 714  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39304746 caagttacaacaaactaattagtaaggtaaccaagctacctagtaataacagcaaggtcaaaaat 39304810  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 39304064 - 39304128
Alignment:
Q  9 tagataatactattttgaagagaattggttgcattgaannnnnnnatttagcaaatgttggtata 73  Q
    |||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  39304064 tagatactactattttgaagagaattggttgcattgaatttttttatttagcaaatgttggtata 39304128  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 20267873 - 20267916
Alignment:
Q  122 tagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||    
T  20267873 tagtctagtggttagagaaattcaccttaaaggtaaataagtgg 20267916  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 35308509 - 35308480
Alignment:
Q  135 agagaaattcaccttaaagataaataagtg 164  Q
    ||||||||||||||||||||||||||||||    
T  35308509 agagaaattcaccttaaagataaataagtg 35308480  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 29321952 - 29322001
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| |||||||| |||  |||||||||||||||||||||||||||||||    
T  29321952 gtcaagtagtctagtggctagagaaattcaccttaaagataaataagtgg 29322001  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 16965864 - 16965816
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtg 164  Q
    |||| ||||||||||||  |||||||||||| |||||||||||||||||    
T  16965864 gtcaagtagtctaatggctagagaaattcacattaaagataaataagtg 16965816  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 38503233 - 38503282
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| |||||||| |||  ||||||||||||||||||||| |||||||||    
T  38503233 gtcaagtagtctattggctagagaaattcaccttaaagatgaataagtgg 38503282  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 38064096 - 38064047
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| |||||| | |||| ||||||||||||||||||||| |||||||||    
T  38064096 gtcaagtagtccagtggttagagaaattcaccttaaagatgaataagtgg 38064047  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 38544901 - 38544950
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| ||||| || |||| |||||||| ||||||||||||||||||||||    
T  38544901 gtcaagtagtttagtggttagagaaatccaccttaaagataaataagtgg 38544950  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 29645803 - 29645852
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| |||||||| |||  ||||||||||||||||||||| |||||||||    
T  29645803 gtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtgg 29645852  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 31435477 - 31435526
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| |||||||| |||  ||||||||||||||||||||| |||||||||    
T  31435477 gtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtgg 31435526  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 605
Target Start/End: Original strand, 38227577 - 38227657
Alignment:
Q  524 tgacagtaggcatatgcctctttaaataggtacaagcattgaaaaaatttggttgatgttactttccaagacatagagacaa 605  Q
    |||| |||||||||||||||||||| ||| || ||||||||  ||||| |||||||| || || ||  ||||||||||||||    
T  38227577 tgactgtaggcatatgcctctttaagtagatagaagcattg-caaaatctggttgatattcctctcagagacatagagacaa 38227657  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 38668247 - 38668198
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| |||||||| |||  ||||||||||||||||||||| |||||||||    
T  38668247 gtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtgg 38668198  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 50676843 - 50676892
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| |||||||| |||| ||||||||||||||||||| | |||||||||    
T  50676843 gtcaagtagtctagtggttagagaaattcaccttaaaggtgaataagtgg 50676892  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 6270531 - 6270502
Alignment:
Q  135 agagaaattcaccttaaagataaataagtg 164  Q
    ||||||||||||||||||||||||||||||    
T  6270531 agagaaattcaccttaaagataaataagtg 6270502  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 33482618 - 33482667
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| ||||||| ||||| ||||||||||| ||||||||| |||||||||    
T  33482618 gtcaagtagtctgatggttagagaaattcatcttaaagatgaataagtgg 33482667  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 42678300 - 42678349
Alignment:
Q  116 gtcacgtagtctaatggtaagagaaattcaccttaaagataaataagtgg 165  Q
    |||| ||| |||| |||| ||||||||||||||||||||| |||||||||    
T  42678300 gtcaagtaatctagtggttagagaaattcaccttaaagatgaataagtgg 42678349  T

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