View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8935_low_5 (Length: 587)
Name: NF8935_low_5
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 273 - 570
Target Start/End: Original strand, 45961586 - 45961883
Alignment:
| Q |
273 |
tacagagaggtaattctagagaaacaactcactggtcaccgtgttgatcgctccatttgtaactggttttgggatcaacctcattccttcaagcaacaac |
372 |
Q |
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| T |
45961586 |
tacagagaggtaattctagagaaacaactcactggtcaccgtgttgatcgctccatttgtaactggttttgggatcaacctcattccttcaagcaacaac |
45961685 |
T |
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| Q |
373 |
ccgttattgcttcaccaacacattatcttttccaagtttttcgtgatggaatcacttttttggcatgtactcaagttgaaatgccacctttgatggccat |
472 |
Q |
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| T |
45961686 |
ccgttattgcttcaccaacacattatcttttccaagtttttcgtgatggaatcacttttttggcatgtactcaagttgaaatgccacctttgatggccat |
45961785 |
T |
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| Q |
473 |
tgaggtaataattatgcgattatttgcaattcatatgagtcaatgttatgtttttcctttaaccattcatttttagttcctttgtagggtagctgatg |
570 |
Q |
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| T |
45961786 |
tgaggtaataattatgcgattatttgcaattcatatgaatcaatgttatgtttttcctttaaccattcatttttagttcctttgtagggtagctgatg |
45961883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 45961321 - 45961507
Alignment:
| Q |
1 |
atcctagtatca-ttagaatacttacaaaagaatagagtattttt-gttgaattaaannnnnnnnnnnngttcaatggtgtgaagtgatggaaatagttg |
98 |
Q |
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| T |
45961321 |
atcctagtatcaattagaatacttacaaaagaatagagttttttttgttgaattaactttttcttttttgttcaatggtgtgaagtgatggaaatagttg |
45961420 |
T |
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| Q |
99 |
gagtcgaatgataaagtaataatttttgagtcagagatgttgcagtgcatttttcttctctccgattccgggtgagttcagttaacc |
185 |
Q |
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| T |
45961421 |
gagtcgaatgataaagtaataatttttgagtcagagatgttgcagtgcatttttcttctctccgattccgggtgagttcagttaacc |
45961507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 45956200 - 45956240
Alignment:
| Q |
133 |
agatgttgcagtgcatttttcttctctccgattccgggtga |
173 |
Q |
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| T |
45956200 |
agatgttgtagtgcacttttcttctctccgattccaggtga |
45956240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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