View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8935_low_7 (Length: 584)
Name: NF8935_low_7
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_low_7 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Original strand, 37068767 - 37069319
Alignment:
| Q |
18 |
ggttctttgcagaatgccttcaaatatgattttagtagaaaatgggaattgagaaattgttaattaataaatgattgaacatggtacctacaaacaaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068767 |
ggttctttgcagaatgccttcaaatatgattttagtagaaaatgggaatcgagagattgttaattaataaatgattgaacatggtacctacaaacaaaat |
37068866 |
T |
|
| Q |
118 |
attcaatacttaattcaatgatcaacccgaactttcatgtatttcatttgaggttgttagctatagtgatgaggatttagagtgcacattgtttactgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068867 |
attcaatacttaattcaatgatcaacccgaactttcatgtatttcatttgaggttgttagctatagtgatgaggatttagagtgcacattgtttactgtt |
37068966 |
T |
|
| Q |
218 |
tcatgtcgagaaaagagcaacacttaggttaatggtggataactggtggctctctctagtggtctaatcagcttcatctgtcttcaactgtgagtcaagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37068967 |
tcatgtcgagaaaagagcaacacttaggttaatggtggataactggtggctctctctagtggtctaatcagcttca------------tgtgagtcaagt |
37069054 |
T |
|
| Q |
318 |
tcttcaaggagaaaatgttagggagaatcttagaggtttcatggatatcctaatttgaggaatgaataccctttggatcttacttattctatggctgaga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37069055 |
tcttcaaggagaaaatgttagggagaatcttagaggtttcatggatatcctaatttgagggatgaataccctttggatcttacttattctatggctgaga |
37069154 |
T |
|
| Q |
418 |
ttgccaaaatatgtaccgctcatgacctcaattcaagaacaaatgtttctgaggttttcatggttctgtctaagtttcaatcctcaaaattggacaagag |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37069155 |
ttgccaaaatatgtaccgctcatgacctcaattcaagaacaaatgtt--tgaggttttcatggttctgtctaagtttcaatcctcaaaattggacaagag |
37069252 |
T |
|
| Q |
518 |
ttttgtgagtttatttaatctttctatacaaagtaaaatacaacgacttgccttgcgagtgttgcac |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37069253 |
ttttgtgagtttatttaatctttctatacaaagtaaaatacaacgacttgccttgcgagtgttgcac |
37069319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 285 - 509
Target Start/End: Original strand, 37064847 - 37065070
Alignment:
| Q |
285 |
tcagcttcatctgtcttcaactgtgagtcaagttcttcaaggagaaaatgttagggagaatcttagaggtttcatggatatcctaatttgaggaatgaat |
384 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| || ||| |
|
|
| T |
37064847 |
tcagcttcttctgtcttcaactgtgagtcaagttcttcaagttgaaaatgttacggagaatcttagaggtttcatggat--cctaatttgagggataaat |
37064944 |
T |
|
| Q |
385 |
accctttggatcttacttattctatggctgagattgccaaaatatgtaccgctcatgacctcaattcaagaacaaatgtttct-gaggttttcatggttc |
483 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
37064945 |
accctttggatcttacttattctatggatgagattgccaaaagatgtgttgatcatgacctcaattcaaggacaaatgtttctgggggttttcatggtta |
37065044 |
T |
|
| Q |
484 |
tgtctaagtttcaatcctcaaaattg |
509 |
Q |
| |
|
|||| | | |||||||||||| |||| |
|
|
| T |
37065045 |
tgtccacgattcaatcctcaatattg |
37065070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 299 - 511
Target Start/End: Original strand, 37062552 - 37062762
Alignment:
| Q |
299 |
cttcaactgtgagtcaagttcttcaaggagaaaatgttagggagaatcttagaggtttcatggatatcctaatttgaggaatgaataccctttggatctt |
398 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||||||||||| || |||||||| ||||||| |||||||||||| |
|
|
| T |
37062552 |
cttcaactgtgaatcaagttcttgaaggagacaatgttagggagaagcttagaggtttcatggat--ccaaatttgagagatgaatatcctttggatctt |
37062649 |
T |
|
| Q |
399 |
acttattctatggctgagattgccaaaatatgtaccgctcatgacctcaattcaagaacaaatgtttctgaggttttcatggttctgtctaagtttcaat |
498 |
Q |
| |
|
| | ||| |||||||||||||| |||| |||| |||| ||| || ||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
37062650 |
gcattttcaatggctgagattgctaaaagatgtgttgctcgtgatcttaattcaagaccaaatgtttctgaggttttcatgattctgtctaagattcaat |
37062749 |
T |
|
| Q |
499 |
cctcaaaattgga |
511 |
Q |
| |
|
|||| | |||||| |
|
|
| T |
37062750 |
cctctacattgga |
37062762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 258
Target Start/End: Original strand, 37064709 - 37064845
Alignment:
| Q |
119 |
ttcaatacttaattcaatgatcaacccgaactttcatgtatttcatttgaggttgttagctatagtgatgaggatttagagtgcacattgtttactgttt |
218 |
Q |
| |
|
|||||||||| || ||| ||| |||| | |||| |||||||||||||||||||||||| |||||||| | | |||||||| |||| ||| |||||| |
|
|
| T |
37064709 |
ttcaatacttcgtttaattatctacccaaccttttatgtatttcatttgaggttgttagatatagtgacaaaggtttagagtacaca---ttttctgttt |
37064805 |
T |
|
| Q |
219 |
catgtcgagaaaagagcaacacttaggttaatggtggata |
258 |
Q |
| |
|
||||| ||||||||| || || |||| || |||||||||| |
|
|
| T |
37064806 |
catgttgagaaaagaacagcatttagtttcatggtggata |
37064845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 37078791 - 37078912
Alignment:
| Q |
81 |
ttaataaatgattgaacatggtacctac-aaacaaaatattcaatacttaattcaatgatcaacccgaactttcatgtatttcatttg--aggttgttag |
177 |
Q |
| |
|
||||||||||||| |||||||| | | | ||||| |||||||||||||| || | |||||||| | |||||||||||||||| | |||||||||| |
|
|
| T |
37078791 |
ttaataaatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcatattcaaggttgttag |
37078890 |
T |
|
| Q |
178 |
ctatagtgatgaggatttagag |
199 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
37078891 |
ctatagtgatgagggtttagag |
37078912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University