View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8935_low_8 (Length: 556)
Name: NF8935_low_8
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 38505471 - 38505989
Alignment:
| Q |
18 |
aatctaaacctcaaactacaagcatatcaaacaacatgtactaaaacgatgaaacacaacactgcactcggacaataaagttatagaaaacacaagaaaa |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38505471 |
aatctaaacctcaaactacaagtatatcaaacaacatgtattaaaacgatgaaacacaacactgcactcggacaataaagttatagaaaacacaagaaaa |
38505570 |
T |
|
| Q |
118 |
accatattggtaattggtatggttatcacttagataaaataaaagataagtgatatagggagtgattctgccgcaatagaatgaccgaaaaacacgaatc |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38505571 |
accatattggtaattggtatggttatcacttggataaaataaaagagaagtgatatagggagtgattctgccgcaatagaatgaccgaaaaacacgaatc |
38505670 |
T |
|
| Q |
218 |
tctaatggattggaaagaaataaaatagaaatgctaaagagaagacataatttcctctctaaatacatatcaaaagggaattgaagatatcatagttcat |
317 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
38505671 |
tctgatggattggaaagaaacaaaatagaaatgctaaagagaagacataatttcctctctaaatacatatcaaaagggatttgaagatatcatagtttat |
38505770 |
T |
|
| Q |
318 |
ctataagaataattcttgtatagatactcatatttagatacactnnnnnnnnnnnnnnnnnnnnttaaataatatatatttaaaatagttgaataatgtg |
417 |
Q |
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|||||||||||||||||||||||| || ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38505771 |
ctataagaataattcttgtatagacacacatatttggatacact--aaaaagaaagaaaaaaaattaaataatatatatttaaaatagttgaataatgtg |
38505868 |
T |
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| Q |
418 |
tattttttagtgcgtgtaaaaaatttatgtgtctaagcaagaattactttgtccaaacaattagaaaatattccaaccaaaacaacaagcatgtactaaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38505869 |
tattttttagtgcgtgtaaaaaatttatgtgtctaagcaagaattactttgtccaaacaattagaaaatattccaaccaaaacaacaagcatgtactaaa |
38505968 |
T |
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| Q |
518 |
tgagtgtgtgtataaaattaa |
538 |
Q |
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||||||||||||||||||||| |
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| T |
38505969 |
tgagtgtgtgtataaaattaa |
38505989 |
T |
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