View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8935_low_9 (Length: 518)
Name: NF8935_low_9
Description: NF8935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8935_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 20 - 505
Target Start/End: Original strand, 40565290 - 40565777
Alignment:
| Q |
20 |
cacccacgtcctatgttcttcggcttctctgaattcagcttcataccaaacttctgtcgcagcctcacatccgaaaaaacaatgcctatcactctcccac |
119 |
Q |
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| T |
40565290 |
cacccacgtcctatgttcttcggcttctctgaattcagcttcataccaaacttctgtcgcagcctcacatccgaaaaaacaatgcctatcactctcccac |
40565389 |
T |
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| Q |
120 |
atcagctcacaactttcacactcgagggcaggaaccacttctttgaataccaataatatgcatacaaatatgcacatcaatgtcatcaaaaacaaagact |
219 |
Q |
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| T |
40565390 |
atcagctcacaactttcaccctcgagggcaggaaccacttctttgaataccaataatatgcatacaaatatgcacatcaatgtcatcaaaaacaaagact |
40565489 |
T |
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| Q |
220 |
ttgtcaataacagagacgttagtatatataacattatcatgatcgatcaaaaggattagaccatttataatataaatatgtgtaca---aattcacgttt |
316 |
Q |
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| T |
40565490 |
ttgtcaataacagagacgttagtatatataacattatcat----gatcaaaaggattagaccatttataatataaatatgtatacaaataattcacgttt |
40565585 |
T |
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| Q |
317 |
agaatcacaactactcaacggtttcttttttatacataatatacaaacatggtttttgacaaaaacagaatatataacaatatttttgactggacatatt |
416 |
Q |
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| T |
40565586 |
agaatcataactactcaacggtttcttttttatacataatatacaaacatggtttttgacaaaaacagaatatataacaatatttttgactggacatatt |
40565685 |
T |
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| Q |
417 |
atataaacatgactata---tagtaattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggt |
505 |
Q |
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| T |
40565686 |
atataaacatgactatatagtagtaattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggt |
40565777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 40570283 - 40570336
Alignment:
| Q |
369 |
tttttgacaaaaacagaatatataa-caatatttttgactggacatattatata |
421 |
Q |
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| T |
40570283 |
tttttgacagaaacataatatataaacaatatttttgactggaaataatatata |
40570336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 8490036 - 8490077
Alignment:
| Q |
392 |
aacaatatttttgactggacatattatataaacatgactata |
433 |
Q |
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| T |
8490036 |
aacaatatttttgactggacataatatataaacatgactata |
8490077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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