View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_high_13 (Length: 261)
Name: NF8936_high_13
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 3205633 - 3205870
Alignment:
| Q |
16 |
gttttaacttctagtattgatctgtcttttgaagatcgagaaagaatatagatgtgcttattgtaccgttgtggtggaggttgatacttcacgatgtatg |
115 |
Q |
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| T |
3205633 |
gttttaacttctagtattgatctgtcttttgaagatcgagaaagaatatagatgtgcttgttgtaccgttgtggtggaggttgatccttcacgatgtatg |
3205732 |
T |
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| Q |
116 |
agaattgtacctgcaagcacgttagcacgctcaagttagtatgagaacgagatggatatgtgcgaaataaggtaaaagtgaaacgtactttaggggtgac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3205733 |
agaattgtacctgcaagcacgttagcacgctcaagttagtatgagaacgagatggatatgtgcgaaataaggtaaaagtgaaacgtactttaggggtgac |
3205832 |
T |
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| Q |
216 |
gtcatgtcaccctcatatagacgtgtaggagaataatc |
253 |
Q |
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| T |
3205833 |
gtcatgtcaccctcatatagacgtgtaggagaataatc |
3205870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 33815621 - 33815667
Alignment:
| Q |
168 |
tggatatgtgcgaaataaggtaaaagtgaaacgtactttaggggtga |
214 |
Q |
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| T |
33815621 |
tggatatgtgcgaaatgatgtaaaagtgaatcatactttaggggtga |
33815667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 48954396 - 48954286
Alignment:
| Q |
141 |
cacgctcaagttagtatgagaacgagatggatatgtgcgaaataaggtaaaagtgaaacgtactttaggggtgacgtcatgtcaccctcatatagacgtg |
240 |
Q |
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| T |
48954396 |
cacgctcaagttagtatgaaaatgaggtggatatgtgcgaaatggggtaaaagttaattgtgccttgggggtgacgttacatcacccttatataggcgtg |
48954297 |
T |
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| Q |
241 |
taggagaataa |
251 |
Q |
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| T |
48954296 |
taggagaataa |
48954286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 26888036 - 26887933
Alignment:
| Q |
148 |
aagttagtatgagaacgagatggatatgtgcgaaataaggtaaaagtgaaacgtactttaggggtgacgtcatgtcaccctcatatagacgtgtaggaga |
247 |
Q |
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| T |
26888036 |
aagttagtatgagaatgaggtggatatgtgcaaaatggggtaaaagtgaattgtaccttgagggtgacactatgtcacccttatatgtgcgtgtaggaga |
26887937 |
T |
|
| Q |
248 |
ataa |
251 |
Q |
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|||| |
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| T |
26887936 |
ataa |
26887933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 4156714 - 4156795
Alignment:
| Q |
171 |
atatgtgcgaaataaggtaaaagtgaaacgtactttaggggtgacgtcatgtcaccctcatatagacgtgtaggagaataat |
252 |
Q |
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| T |
4156714 |
atatgtgtgaaatatggtaaaagtgaaccgtacattaggagtgacgctatgtcacctttatatagacgtataggagaataat |
4156795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 19431358 - 19431467
Alignment:
| Q |
142 |
acgctcaagttagtatgagaacgagatggatatgtgcgaaataaggtaaaagtgaaacgtactttaggggtgacgtcatgtcaccctcatatagacgtgt |
241 |
Q |
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| T |
19431358 |
acgctcaaatcaatatgagaatgaggtggatatgtgcaaaatgtggtaaaagtgaattgtacattagaggtgacgctatatcacccttatatagttatgt |
19431457 |
T |
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| Q |
242 |
aggagaataa |
251 |
Q |
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|||||||||| |
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| T |
19431458 |
aggagaataa |
19431467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 3162582 - 3162527
Alignment:
| Q |
142 |
acgctcaagttagtatgagaacgagatggatatgtgcgaaataaggtaaaagtgaa |
197 |
Q |
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| T |
3162582 |
acgctcaagttagtatgagaatgaggtgaatatatgggaaatgaggtaaaagtgaa |
3162527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 31696880 - 31696809
Alignment:
| Q |
145 |
ctcaagttagtatgagaacgagatggatatgtgcgaaataaggtaaaagtgaaacgtactttaggggtgacg |
216 |
Q |
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| T |
31696880 |
ctcaagttggtatgagaatgaggtggatatgtgtgaaatgtggtaaaagtgaatcgtaccttgggagtgacg |
31696809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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