View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_high_3 (Length: 530)
Name: NF8936_high_3
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 9030710 - 9031224
Alignment:
| Q |
1 |
tcacaccgaattaagggaatgcgcaatttaaaagagagaaaagcaataatcgattcgcccctctacaacaaacttttgtgccaaacccaaaggcaagtct |
100 |
Q |
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| T |
9030710 |
tcacaccgaattaagagaatgcgcaatttaaaagagagaaaagcaataatcgattcgcccctctacaacaaacttttgtgccaaacccaaaggcaagtct |
9030809 |
T |
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| Q |
101 |
cactcgctgcactcgtttgaccttgtccacctattagtacttatgagtcaaactaaatattaacaaatgttgcattctagcatggaatggcaatctactt |
200 |
Q |
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| T |
9030810 |
cactcgctgcgctcgtttgaccttgtccacctattagtacttatgagtcacactaaatattaacaaatgttgcattctagcatggaatggcaatctactt |
9030909 |
T |
|
| Q |
201 |
ctccaacatcatgttgctttccttgaaataannnnnnnnnagataatatcgtgattcatggaggttaaactacaacttttaaattttgttgtttttaagt |
300 |
Q |
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| T |
9030910 |
ctccaacatcatgttgctttccttgaaataatttttttttagataatatcgtgattcatggaggttaaactacaacttttaaattttgttgtttttaagt |
9031009 |
T |
|
| Q |
301 |
tcttaattagaggtcatcaaaatctaattatgtcttgacttgtggggtggagtctgccttcaactttgaccttgataaatataactgaatcaatgaactt |
400 |
Q |
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| T |
9031010 |
tcttaattagaggtcatcaaaatctaattatgtcttcacttgtggggtggagtctgccttcaactttgaccctgataaatataactgaatcaatgaactt |
9031109 |
T |
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| Q |
401 |
taatcatttctatattttgctttcaaggcatgttgatgatgacattctctattgatgcagaaatattgctgccaatacttgtctctcttttatcaaacag |
500 |
Q |
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| T |
9031110 |
taatcatttctatattttgctttcaaggcatgttgatgatgacattctctattgatgaagaaatattgctgccaatacttgtctctctttaatcaaagag |
9031209 |
T |
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| Q |
501 |
taagcttaacatttt |
515 |
Q |
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| T |
9031210 |
taagcttaacatttt |
9031224 |
T |
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