View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_high_7 (Length: 425)
Name: NF8936_high_7
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 11047528 - 11047926
Alignment:
| Q |
11 |
aagcagagagaaatcacaatttaattacattgagcaggacgtgacatgagggtatgtgatagggaatctcatctataacattaatgtctaaaatatcata |
110 |
Q |
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| T |
11047528 |
aagcaaagagaaatcacaatttaattacattgagcaggacgtgacatgagggtatgtgatagggaatctcatctataacattaatgtctaaaatatcata |
11047627 |
T |
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| Q |
111 |
agaaaattcacatatgcatggttttattatacatatagtactactttttgttttggtgttagctcgcaaattttaatgctacgaaccaaattttgcttag |
210 |
Q |
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| T |
11047628 |
agaaaattcacatatgcatggttttattatacatatagtactactttttgttttggtgttagctcgcaaattttaatgctacgaaccaaattttgcttag |
11047727 |
T |
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| Q |
211 |
atatggccatgacactatagtacgtaggtaaacaatttaagagtaataaagtgatgtacgggccaatgcaatacctactaaattcgtttttatttggtcc |
310 |
Q |
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| T |
11047728 |
atatggccatgacactatagtacgtaggtaaacaatttaagagtaataaagtgatgtacgggccaatgcaatacctactaaattcgtttttatttggtcc |
11047827 |
T |
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| Q |
311 |
taaaaaacgttggattcttatgatccagtggagaataaaattattcaaaggggcgttatacatattcactgcttagtagagattcattgaacatatata |
409 |
Q |
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| T |
11047828 |
taaaaaaagttggattcttatgatccagaggagaataaaattattcaaaggggcgttatacatattcactgcttagtagagattcattgaacatatata |
11047926 |
T |
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