View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8936_low_1 (Length: 606)
Name: NF8936_low_1
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Original strand, 34977006 - 34977590
Alignment:
| Q |
18 |
ttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcg |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977006 |
ttcctcactgaatgagatgaaacacttggagaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcg |
34977105 |
T |
|
| Q |
118 |
cctccacctatgcttcgaaatcttaaactatgtggcaagttggagaagttcccagagtggattcctcaacttacaaatcttgttaagttggaattagcac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34977106 |
cctccacctatgcttcgaaatcttaaactatgtggcaagttggagaagttcccggagtggattcctcaacttacaaatcatgttaagttggaattagcac |
34977205 |
T |
|
| Q |
218 |
gttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctccaatgcttatgtaggcgaaagtttaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977206 |
gttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctccaatgcttatgtaggcgaaagtttaca |
34977305 |
T |
|
| Q |
318 |
ttttcatgatggaggttgtcaaaatctaaaggaactgtacattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcattctcta |
417 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977306 |
ttttcatgatggaggttgtcaaaatcttaaggaactgtacattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcattctcta |
34977405 |
T |
|
| Q |
418 |
aaaaagcttgagttattagaaatccccaacctcgagacggttccatctgggatccaacacttagagaacctcgagaggacggttttctaaagggatagat |
517 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
34977406 |
aaaaagcttgagttattcgaaatccccaacctcgagacggttccttctgggatccaacacttaaagaacctcgagagtacggtttcctaaagggatagat |
34977505 |
T |
|
| Q |
518 |
atcacacgccatccaagggtcagaaaaggtgaacattttcttccatatctaattgtaaaaatgcattggcaatatctctgcttct |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
34977506 |
atcacacgccatccaagggtcagaaaaggtgaacattttcttccatatctaattgtaaaaatgcattggcaatatttctggttct |
34977590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 455
Target Start/End: Original strand, 34990879 - 34991322
Alignment:
| Q |
15 |
atcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||| | | ||| | |||| | | ||||||||||||| | |||||||| |
|
|
| T |
34990879 |
atcttcctcactgaatgagatgcgacacttggagaaattacgcattgtgtcaagtagcggatatgatatggttcatgatgtcattgatatgcatttggtt |
34990978 |
T |
|
| Q |
115 |
tcgcctccac---ctatgcttcgaaatcttaaactatgtggcaagttggagaagttcccagagtggattcctcaacttacaaatcttgttaagttggaat |
211 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || | |
|
|
| T |
34990979 |
tcacctccactacctatgcttcgaaatcttaaactatgtgtcaagttggagaagtttccagagtggattcctcaacttaaaaatcttgttaagtttgatt |
34991078 |
T |
|
| Q |
212 |
tagcacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctccaatgcttatgtaggcgaaag |
311 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| |
|
|
| T |
34991079 |
tagcatattccttattaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatcaacaaagcttatgaaggtgaaag |
34991178 |
T |
|
| Q |
312 |
tttacattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
34991179 |
tttacattttcatgatggaggttgtcaaaatctaaaggaactatacattggagactgtcccaacatgaattcaattgttattgataaaggagcattacat |
34991278 |
T |
|
| Q |
412 |
tctctaaaaaagcttgagttattagaaatccccaacctcgagac |
455 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||||||| |||| |
|
|
| T |
34991279 |
tctctaaaaaagtttgagttattcgagatccccaacctcaagac |
34991322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 15 - 479
Target Start/End: Complemental strand, 2304322 - 2303859
Alignment:
| Q |
15 |
atcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |||| |||| ||||| ||| ||||| || | ||||||||||||||||||| |||||||| |
|
|
| T |
2304322 |
atcttcctcgttgaatgagatgcgacactcggagaaattatgcattatgtcaagaagcggagatgatggggtttttgatgtcattgatttacatttggtt |
2304223 |
T |
|
| Q |
115 |
tcgcctccacctatgcttcgaaatcttaaactatgtggcaagttggagaagttcccagagtggattcctcaacttacaaatcttgttaagttggaattag |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||| ||||||||||||||| || |||| |
|
|
| T |
2304222 |
tcgcttccacctatgcttcgaaatcttaaactatgtggcaagttggagaattttccagag---atttctcaacttcaaaatcttgttaagtttgatttag |
2304126 |
T |
|
| Q |
215 |
cacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctccaatgcttatgtaggcgaaagttt |
314 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
2304125 |
cagattccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctataatgcttatgaaggcaaaagttt |
2304026 |
T |
|
| Q |
315 |
acattttcatgatggaggttgtcaaaatctaaaggaactgta--cattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcatt |
412 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| || ||||||| | | ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2304025 |
acattttcatgatggaggttttcaaaatctaaaagaactatatacattggacacttgtccaacttgaattcaattgttatcgataaaggagcattgcatt |
2303926 |
T |
|
| Q |
413 |
ctctaaaaaagcttgagttattagaaatccccaacctcgagacggttccatctgggatccaacactt |
479 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||| ||| ||||| ||||| ||||||||||| |
|
|
| T |
2303925 |
ctctaaaaaagttcgagttattcaaaatccccaacctcaagaatgttccttctggaatccaacactt |
2303859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 93 - 485
Target Start/End: Original strand, 34984295 - 34984671
Alignment:
| Q |
93 |
tgtcattgatttagatttggtttcgcctccacc---tatgcttcgaaatcttaaactatgtggcaagttggagaagttcccagagtggattcctcaactt |
189 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| | ||||||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
34984295 |
tgtcattgatttacatttggtttcgcctccactacatatgcttcgaagttttaaactatatggaaagttggagaagtt-----------ttcctcaactt |
34984383 |
T |
|
| Q |
190 |
acaaatcttgttaagttggaattagcacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatct |
289 |
Q |
| |
|
| ||||||||||||||| || |||||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34984384 |
aaaaatcttgttaagtttgatttagcaaattccttcttaactgatgatccaatt--gtatttataaaacatgccaaacttgttgtccctctcaatcatct |
34984481 |
T |
|
| Q |
290 |
ccaatgcttatgtaggcgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagaatgtcccaacatgaattcaattgt |
389 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
34984482 |
ccaatgcttatgaaggcgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagacttgcgcaacatgaattcaattgt |
34984581 |
T |
|
| Q |
390 |
tatcgataaaggagcattgcattctctaaaaaagcttgagttattagaaatccccaacctcgagacggttccatctgggatccaacacttagagaa |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
34984582 |
tatcgataaaggagcattgcattctctaaaaaagtttgagttattcggaatgcccaacctc------gttccttctgggatccaacacttagagaa |
34984671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 34984050 - 34984242
Alignment:
| Q |
15 |
atcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtt |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || || |||| ||||||||||||| || ||| | ||| |||||||||||||||| |||||||| |
|
|
| T |
34984050 |
atcttcctcattgaatgagatgcgacacttagaaaaattatgcattgtgtcaggatgggaagatggttcttattatgatgtcattgatttacatttggtt |
34984149 |
T |
|
| Q |
115 |
tcgcctccacctatgcttcgaaatcttaaactatgtggcaagttggagaagttcccagagtggattcctcaacttacaaatcttgttaagttg |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| |||||||||| | |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34984150 |
tcgcctccacctatgcttcgaattcttaaacttggtggcaggttggagaagattccagagtggattcctcaacttaaaaatcttgttaagttg |
34984242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 539 - 602
Target Start/End: Original strand, 34984787 - 34984848
Alignment:
| Q |
539 |
agaaaaggtgaacattttcttccatatctaattgtaaaaatgcattggcaatatctctgcttct |
602 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
34984787 |
agaaaaggtgaacattttcttccata--taattgtaaaaatgtattggcaatatttctggttct |
34984848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 40581560 - 40582030
Alignment:
| Q |
15 |
atcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtt |
114 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | || ||| |||||| |||||| |||| | || | | || |||||||||||||||| |||||||| |
|
|
| T |
40581560 |
atcttcctcattgaatgagatgcgacacttgaaaaaattaagcattgtatcaggatggggacaagattttgtttatgatgtcattgatttacatttggtt |
40581659 |
T |
|
| Q |
115 |
tcgcctccacctatgcttcgaaatcttaaactatgtggcaagttggagaagttcccagagtggattcctcaacttacaaatcttgttaagttggaattag |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||| || |||| |
|
|
| T |
40581660 |
tcgcctccacctatgcttcgaaagcttaaactatgtggcaagttgaagaagtttccagagtgggttcctcaacttaaaaatcttgttaagtttgatttag |
40581759 |
T |
|
| Q |
215 |
cacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctccaatgcttatgtaggcgaaagttt |
314 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
40581760 |
caaattccttcttaaatgatgatccaattaagtatctagaaaacatgctaaacatgttgtccctctcaatcatctacaatgcttatgaaggcgaaagctt |
40581859 |
T |
|
| Q |
315 |
acattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcattct |
414 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40581860 |
acattttcatgacggaggttgtcaaaatctaaaggaactgtacattggaggcttgctcaacgtgaattcaattgttatcgataaaggagcattgcattct |
40581959 |
T |
|
| Q |
415 |
ctaaaaaagcttgagttattagaaatccccaacctcgagacggttccatctgggatccaacacttagagaa |
485 |
Q |
| |
|
|||||| | |||||||||| | |||||||||||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
40581960 |
ctaaaattgtttgagttattccatatccccaacctcaagacggttccttctgggatccaacacctagagaa |
40582030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 226 - 482
Target Start/End: Complemental strand, 22619507 - 22619251
Alignment:
| Q |
226 |
ttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatg |
325 |
Q |
| |
|
|||| ||| |||||||| |||| || ||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| | |
|
|
| T |
22619507 |
ttaattgaagatccaataaagtcgcttgaaaatctgcaaaacttgttgtccctctcaatcatcaacaatgcttatgaaggtgaaagtttacattttcacg |
22619408 |
T |
|
| Q |
326 |
atggaggttgtcaaaatctaaaggaactgtacattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagct |
425 |
Q |
| |
|
||||||| | ||||||||||||||||| || ||| |||||| || ||| || |||||||| | ||||| |||||||| | ||||||||||||||| | |
|
|
| T |
22619407 |
atggagggttgcaaaatctaaaggaactatatattagagaatcgcctaacttgcattcaattttcatcgacaaaggagcgctacattctctaaaaaagtt |
22619308 |
T |
|
| Q |
426 |
tgagttat-tagaaatccccaacctcgagacggttccatctgggatccaacacttaga |
482 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||||||| ||| |||| ||||||||| |
|
|
| T |
22619307 |
cgagttatctag-catccccaacctcaagacggttccagatggcatccgacacttaga |
22619251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 226 - 461
Target Start/End: Complemental strand, 22646801 - 22646566
Alignment:
| Q |
226 |
ttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatg |
325 |
Q |
| |
|
||||||||| ||||||| | || |||| || ||| ||||||| ||||| ||||||||||| ||| |||||| ||| |||| |||||||||||||| |
|
|
| T |
22646801 |
ttaactgataatccaatagaacatttagataaaatgtcaaacttattgtctctctcaatcattaacaaagcttataaaggtgaaattttacattttcatg |
22646702 |
T |
|
| Q |
326 |
atggaggttgtcaaaatctaaaggaactgtacattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagct |
425 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||| ||| | || || ||||||| || || || ||| |||||||||| | ||||||||||||| | |
|
|
| T |
22646701 |
atggagggtttcaaaatctaaaggaactatacattacagacttgcctgacttgaattcgatcgtcattgatgaaggagcattaccttctctaaaaaagtt |
22646602 |
T |
|
| Q |
426 |
tgagttattagaaatccccaacctcgagacggttcc |
461 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |
|
|
| T |
22646601 |
ccagttatctcgtatccccaaccttgagacggttcc |
22646566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 22614041 - 22613956
Alignment:
| Q |
97 |
attgatttagatttggtttcgcctccacctatgcttcgaaatcttaaactatgtggcaagttggagaagttcccagagtggattcc |
182 |
Q |
| |
|
||||||||| ||||| |||| |||||| ||||||||| || ||| ||| | ||| ||||| |||||||| |||||||||||||| |
|
|
| T |
22614041 |
attgatttacatttgatttcatgtccaccaatgcttcgagatattagactgtatgggaagttagagaagttgccagagtggattcc |
22613956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University