View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_low_11 (Length: 498)
Name: NF8936_low_11
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 159 - 480
Target Start/End: Original strand, 45399363 - 45399683
Alignment:
| Q |
159 |
aaatgttgcgaccttatgggtcagtttaggcagtgttgtaatacgacgacccaatttcgaacatagagcgaagaccgataattattccatacggccgtgt |
258 |
Q |
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| T |
45399363 |
aaatgttgtgaccttatgggtcagtttaggcagtgatgtaatacgacgacccaatttcgaacatagagcgaaggccgataattattccatacggccgtgt |
45399462 |
T |
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| Q |
259 |
taatgctcatgcatactactcactgccataaatgtaaccattgaaaaaatatgatttttttgaagtacaaagattaattattttaaagttannnnnnnnn |
358 |
Q |
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| T |
45399463 |
taatgctcatgcatactactcaccgccataaatgtaaccattgaaaaaatatgatttttttgaagtacaaagattaattattttaaagtta-tttttttt |
45399561 |
T |
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| Q |
359 |
aacaaatcaaaatgcaatactatattaaccaatagtgattcaccctgcataagacgtgctcaaaggtgaaacactaaacagagtacaaagaaactctcat |
458 |
Q |
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| T |
45399562 |
aacaaatcaaaatgccatactatattaaccaatagtgattcaccctgcataagacgtgctgaaaggtgaaacactaaacagagtacaaagaaactctcat |
45399661 |
T |
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| Q |
459 |
acaaagaagagggtgtcgaaac |
480 |
Q |
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| T |
45399662 |
acaaagaagagggtgtcgaaac |
45399683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45399298 - 45399367
Alignment:
| Q |
1 |
gttagatctcaaaccatgagagtaggaggcatgggcgtgcctaaacccatattagtagtgttcacaaatg |
70 |
Q |
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| T |
45399298 |
gttagatctcaaaccatgagagtaggaggcatgggcgtgcctaaacgcatattagtagtgttcacaaatg |
45399367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 292914 - 292999
Alignment:
| Q |
363 |
aatcaaaatgcaatactatattaaccaatagtgattcaccctgcataagacgtgctcaaaggtgaaacactaaacagagtacaaag |
448 |
Q |
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| T |
292914 |
aatcaaaatggaacaatatattaaccaagagtgattcacctcgcacaagacgtgttgaaaggtgcagcactaaacagagtacaaag |
292999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 438
Target Start/End: Complemental strand, 37124942 - 37124863
Alignment:
| Q |
359 |
aacaaatcaaaatgcaatactatatt-aaccaatagtgattcaccctgcataagacgtgctcaaaggtgaaacactaaaca |
438 |
Q |
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| T |
37124942 |
aacaaatcaaaatggaatataatattaaaccaaaagtgattcactctgcacaaggcgtgctgaaa-gtgaaacacttaaca |
37124863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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