View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_low_13 (Length: 471)
Name: NF8936_low_13
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 31628721 - 31628310
Alignment:
| Q |
19 |
aataatacttcttctatgttccttagcttcaatgacagcctccaaatcaaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaag |
118 |
Q |
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| T |
31628721 |
aatagtacttcttctatgttccttagcttcaatgacagcctccaaatcaaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaag |
31628622 |
T |
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| Q |
119 |
agcctatagatgctattaatccctatcataatcacattgctcacaacctattaatctcatctgataaccctctctcatgtgactataaacttgaatttga |
218 |
Q |
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| T |
31628621 |
agtctatagatgctattaatccctatcataatcaaattgctcaggaccaattaacatcatcagataaccctctctcgagagactataagcttgaatttga |
31628522 |
T |
|
| Q |
219 |
ttatttgacgcatgatactatgctatcatccaccaaatctgttccatttcatgatggattttagtgacctaaattaggtaagtcgtgtatggtgatttaa |
318 |
Q |
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| T |
31628521 |
ttatgtcaggcatgctactatgctatcatccaccaaatcggttccatttaatgatggattttagtcacctaaattagataagttgtgtatggtgatataa |
31628422 |
T |
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| Q |
319 |
ggaatacatgtcgattgttaagaaaatattcaatttattctctaaagttgtctttcaattacatttgaatttgattatgtaaaaagttaa-taatgcctt |
417 |
Q |
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| T |
31628421 |
ggaat--ttgttaattgttaagaaaatatgcaatttattctctaaagttgtcttt-aattacatttgaacttgattatgtaaaaagttaattaatgcctt |
31628325 |
T |
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| Q |
418 |
gtaatttaaagataa |
432 |
Q |
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| T |
31628324 |
gtaatttaaagataa |
31628310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 31678670 - 31679087
Alignment:
| Q |
19 |
aataatacttcttctatgttccttagcttcaatgacagcctccaaatcaaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaag |
118 |
Q |
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||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31678670 |
aataatacttcatctatgtttcttagcttcaatgacaacctccaaatcaaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaag |
31678769 |
T |
|
| Q |
119 |
agcctatagatgctattaatccctatcataatcacattgctcacaacctattaatctcatctgataaccctctctcatgtgactataaacttgaatttga |
218 |
Q |
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| T |
31678770 |
agcctatagatgctattaatccctatcataacca---------------attaacatcatcagactaccctttctcatgtgactataaacttgaatttga |
31678854 |
T |
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| Q |
219 |
ttatttgacgcatgatactatgctatcatccaccaaatctgttccatttcatgatggattttagtgacctaaattaggtaagtcgtgtatggtgatttaa |
318 |
Q |
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| T |
31678855 |
taatttcaggcatgctactatgctatcatccaccaaatctgttccatttcatgatggtttttagtgacctaaattaggtaagtcttgtatggtgatttaa |
31678954 |
T |
|
| Q |
319 |
ggaatacatgtcgattgttaagaaaatattcaatttattctctaaagttgtctttcaattaca-------tttgaatttgattatgtaaaaagttaataa |
411 |
Q |
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||||| ||||| |||||||| |||||| |||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
31678955 |
ggaat--atgtcagttgttaag-aaatatgcaatttattctctaaaattgtctttcaattgcatttgaattttgaatttgattatgtaaaaagttaataa |
31679051 |
T |
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| Q |
412 |
tgccttgtaatttaaagataaattgttctgtttcat |
447 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
31679052 |
tgccttgtaatttaaagataaattgttatgtttcat |
31679087 |
T |
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