View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8936_low_17 (Length: 399)

Name: NF8936_low_17
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8936_low_17
NF8936_low_17
[»] chr3 (5 HSPs)
chr3 (20-382)||(13618947-13619300)
chr3 (185-249)||(4816692-4816756)
chr3 (183-249)||(54383585-54383651)
chr3 (196-249)||(45986147-45986200)
chr3 (186-230)||(35637414-35637458)
[»] chr5 (5 HSPs)
chr5 (51-382)||(26303775-26304098)
chr5 (192-249)||(33461906-33461963)
chr5 (191-238)||(36474946-36474993)
chr5 (210-249)||(43061786-43061825)
chr5 (191-231)||(36465587-36465627)
[»] chr1 (6 HSPs)
chr1 (184-249)||(8445647-8445712)
chr1 (191-239)||(27512812-27512860)
chr1 (191-249)||(7639035-7639093)
chr1 (183-245)||(30700879-30700941)
chr1 (184-248)||(8441036-8441100)
chr1 (184-248)||(8442934-8442998)
[»] chr7 (1 HSPs)
chr7 (197-249)||(42898537-42898589)
[»] chr2 (3 HSPs)
chr2 (184-244)||(36338485-36338545)
chr2 (191-249)||(37653625-37653683)
chr2 (213-249)||(28321001-28321037)
[»] chr4 (1 HSPs)
chr4 (185-249)||(9317589-9317654)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 13618947 - 13619300
Alignment:
Q  20 agcagaatggtttggacaccacactatgccttatcgtgggtaatagtctagtatatgatagtaaaaattgggtaattgcattcattaattttgtcaatgt 119  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13618947 agcaaaatggtttggacaccacactatgccttatcgttggtaatagtctagtatatgatagtaaaaattgggtaattgcattcattagttttgtcaatgt 13619046  T
Q  120 atatattgtgcgtataaacaaatctttctcacttgaagaatccaaacattgtattgaagaaactgagcttagtaacgcaagcttgtgatttaagtagggg 219  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13619047 atatattgggcgtataaacaaatctttctcacttgaagaatccaaatattgtattgaagaaactgagcttagtaacgcaagcttgtgatttaagtagggg 13619146  T
Q  220 cattaagatgttgggaggtctttgatgtgtacaaaaannnnnnnnnnnnnnnntgtattgaagaagagtttttgggagtggattttataaggtgtattgg 319  Q
    |||||||||||||||||||||||||||||| ||||||                |||||||||||||||||||||||||||||||   |||||||||||||    
T  13619147 cattaagatgttgggaggtctttgatgtgtgcaaaaa------aaaaaaatattgtattgaagaagagtttttgggagtggatt---taaggtgtattgg 13619237  T
Q  320 aacagttgtttcctccctcaatcgaggttaaggagagtttgtggttccattcgccagtgaagt 382  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13619238 aacagttgtttcctccctcagtcgaggttaaggagagtttgtggttccattcgccagtgaagt 13619300  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 4816692 - 4816756
Alignment:
Q  185 agcttagtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  4816692 agcttagtaacgcaagcttgtgacctaagtaggggcattaagatgttggaaggtctttgatgtgt 4816756  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 54383585 - 54383651
Alignment:
Q  183 tgagcttagtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  54383585 tgagcttggtaacgcaagcttgtgacctaagtaggggcattaagatgttggaaggtctttgatgtgt 54383651  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 45986147 - 45986200
Alignment:
Q  196 gcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    ||||||||||||| ||| ||||| |||||||||||||| | |||||||||||||    
T  45986147 gcaagcttgtgatctaaatagggacattaagatgttggaaagtctttgatgtgt 45986200  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 35637458 - 35637414
Alignment:
Q  186 gcttagtaacgcaagcttgtgatttaagtaggggcattaagatgt 230  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  35637458 gcttggtaacgcaagcttatgacttaagtaggggtattaagatgt 35637414  T

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Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 51 - 382
Target Start/End: Original strand, 26303775 - 26304098
Alignment:
Q  51 tatcgtgggtaatagtctagtatatgatagtaaaaattgggtaattgcattcattaattttgtcaatgtatatattgtgcgtataaacaaatctttctca 150  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  26303775 tatcgtgggtaatagtctagtatatgatagtaaaaattgggtaactgcattcattagttttgtcaatgtatatattgtgcatataaacaaatctttctca 26303874  T
Q  151 cttgaagaatccaaacattgtattgaagaaactgagcttagtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgta 250  Q
    ||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26303875 cttgaagaatccaaatattgtattgaagaagccgagcttagtaatgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgtg 26303974  T
Q  251 caaaaannnnnnnnnnnnnnnntgtattgaagaagagtttttgggagtggattttataaggtgtattggaacagttgtttcctccctcaatcgaggttaa 350  Q
    ||||||                |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||    
T  26303975 caaaaa-----aatatatatattgtattgaagaagagtttttgggagtggatt---taaggtgtattggaacagttgtttcctccctcagtcgaggttaa 26304066  T
Q  351 ggagagtttgtggttccattcgccagtgaagt 382  Q
    ||||||||||||||||||||||||||||||||    
T  26304067 ggagagtttgtggttccattcgccagtgaagt 26304098  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 33461963 - 33461906
Alignment:
Q  192 taacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    ||||| |||||||||||||||||| | | ||||||||||||| |||||||| ||||||    
T  33461963 taacgtaagcttgtgatttaagtaagagtattaagatgttggaaggtctttaatgtgt 33461906  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 36474993 - 36474946
Alignment:
Q  191 gtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggt 238  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||| ||||    
T  36474993 gtaacacaagcttgtgacttaagtaggcgcattaagatgttggaaggt 36474946  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 43061786 - 43061825
Alignment:
Q  210 taagtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  43061786 taagtaggggcattaagatgttggaaagtctttgatgtgt 43061825  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 36465627 - 36465587
Alignment:
Q  191 gtaacgcaagcttgtgatttaagtaggggcattaagatgtt 231  Q
    ||||| ||||||||||||||||||||| ||||||| |||||    
T  36465627 gtaacacaagcttgtgatttaagtaggcgcattaaaatgtt 36465587  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 8445647 - 8445712
Alignment:
Q  184 gagcttagtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    |||||| |||| ||||||||||||  ||| |||||||||||||||||||| |||||||||||||||    
T  8445647 gagcttggtaatgcaagcttgtgacctaaataggggcattaagatgttggaaggtctttgatgtgt 8445712  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 27512812 - 27512860
Alignment:
Q  191 gtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtc 239  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| |||||    
T  27512812 gtaacgcaaacttgtgatttaagtaggggtattaagatgttggaaggtc 27512860  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 7639093 - 7639035
Alignment:
Q  191 gtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    |||||||||| || |||| ||| |||||| ||||||||||||| |||||||||||||||    
T  7639093 gtaacgcaagtttatgatctaaataggggtattaagatgttggaaggtctttgatgtgt 7639035  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 30700941 - 30700879
Alignment:
Q  183 tgagcttagtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgat 245  Q
    ||||||| || | ||||||||||||  ||||||||||| |||||||||||| ||||| |||||    
T  30700941 tgagcttggtgaggcaagcttgtgacctaagtaggggctttaagatgttggaaggtccttgat 30700879  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 8441036 - 8441100
Alignment:
Q  184 gagcttagtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtg 248  Q
    |||||| |||||| |||||||| |  |||||||||||| |||| |||||| | ||||||||||||    
T  8441036 gagctttgtaacgtaagcttgtaacctaagtaggggcaataaggtgttggaaagtctttgatgtg 8441100  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 8442934 - 8442998
Alignment:
Q  184 gagcttagtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtg 248  Q
    |||||| ||||||||||||||| |  |||||| ||||| |||| |||||| |||| |||||||||    
T  8442934 gagctttgtaacgcaagcttgtaacctaagtaagggcaataaggtgttggaaggtgtttgatgtg 8442998  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 42898537 - 42898589
Alignment:
Q  197 caagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    |||||||||||  ||||||||| |||||||||||||| |||||||||||||||    
T  42898537 caagcttgtgacctaagtagggtcattaagatgttggaaggtctttgatgtgt 42898589  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 36338485 - 36338545
Alignment:
Q  184 gagcttagtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttga 244  Q
    |||||| ||||||||||||||||| |||| || || |||||||||||||  ||||||||||    
T  36338485 gagcttggtaacgcaagcttgtgacttaaatatggacattaagatgttgaaaggtctttga 36338545  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 37653625 - 37653683
Alignment:
Q  191 gtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    ||||| |||||||||||| ||||||| | ||||||||| |||| |||||||||| ||||    
T  37653625 gtaacacaagcttgtgatctaagtagagacattaagatattggaaggtctttgacgtgt 37653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 28321037 - 28321001
Alignment:
Q  213 gtaggggcattaagatgttgggaggtctttgatgtgt 249  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  28321037 gtagaggcattaagatgttgagaggtctttgatgtgt 28321001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 9317654 - 9317589
Alignment:
Q  185 agcttagtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggt-ctttgatgtgt 249  Q
    ||||| ||||| |||||||||||  ||||||||| ||||||| |||||| |||| |||||||||||    
T  9317654 agcttggtaacacaagcttgtgacataagtagggtcattaaggtgttggaaggtcctttgatgtgt 9317589  T

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