View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_low_18 (Length: 388)
Name: NF8936_low_18
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 3 - 372
Target Start/End: Complemental strand, 28253009 - 28252637
Alignment:
| Q |
3 |
agattcgagcaacactatcctgcagagttcctatctccatcggcaagcattacaaagaagagaggtactctgtgatgttcttaatatgaatgtttttcat |
102 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28253009 |
agattcgagtaacactatcctgcagagttcctatctccatcggcaagcattacaaagaagag--gtactctgtgatgttcttaatatgaatgtttttcat |
28252912 |
T |
|
| Q |
103 |
attttacttgatagacctt-acaatttgataatgatattacttattgggga--cgagataacatgatgatgtttacatgggacacaca--taagatttct |
197 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28252911 |
attttacttggtagaccttgacaatttgataatgatattacttgttggggagacgagataacatgatgatgtttacatgggacacacacataagatttct |
28252812 |
T |
|
| Q |
198 |
atgccttatgttttacactttgataagagcccaagagaaaagaagactagnnnnnnnattgatgagacagaatgaaaaggaaggaggatgagtgaatcaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28252811 |
atgccttatgttttacactttgataagagcccaagagaaaagaagactagtttttttattgatgagacagaatgaaaaggaaggaggatgagtgaatcaa |
28252712 |
T |
|
| Q |
298 |
tgtccatacaaaaagataaattacacaatatctaccgcataaaactttaattaaatcaatgtccatacaaaatat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28252711 |
tgtccatacaaaaagataaattacacaatatctaccacataaaactttaattaaatcaatgtccatacaaaatat |
28252637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 3537584 - 3537788
Alignment:
| Q |
20 |
tcctgcagagttcctatctccatcggcaagcattacaaagaagagaggtactctgtgatgttcttaatatgaatgtttttcatattttacttgatagacc |
119 |
Q |
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||||||| ||||||||| ||||||||||| ||||| ||||||||| ||||| |||||||||||| ||||| |||||| |||||||||||||| |||||| |
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| T |
3537584 |
tcctgcaaagttcctatatccatcggcaaacattataaagaagag--gtactttgtgatgttcttgatatggatgtttgtcatattttacttggtagacc |
3537681 |
T |
|
| Q |
120 |
tt-acaatttgataatgatattacttattggggacgagataacatgatgatgtttacatgggacacacataagatttctatgccttatgttttacacttt |
218 |
Q |
| |
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|| || ||||||||||||||||||||| ||||||| ||||| ||||| ||||||| |||| || |||||||| ||||| | ||||||||| ||| |
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| T |
3537682 |
ttggcagtttgataatgatattacttatcggggacgggataatgtgatgttgtttacttggggaacttataagattgctatgacacctgttttacaattt |
3537781 |
T |
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| Q |
219 |
gataaga |
225 |
Q |
| |
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||||||| |
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| T |
3537782 |
gataaga |
3537788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 22925177 - 22924997
Alignment:
| Q |
19 |
atcctgcagagttcctatctccatcggcaagcattacaaagaagagaggtactctgtgatgttcttaatatgaatgtttttcatattttacttgatagac |
118 |
Q |
| |
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|||||||| ||||||||| ||||||||||| ||||| | ||||||| ||||| |||||||||||| ||||| |||||| |||||||||||||| ||||| |
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| T |
22925177 |
atcctgcaaagttcctatatccatcggcaaacattatagagaagag--gtactttgtgatgttcttgatatggatgtttgtcatattttacttggtagac |
22925080 |
T |
|
| Q |
119 |
ctt-acaatttgataatgatattacttattggggacgagataacatgatgatgtttacatgggacacacataagatttctatg |
200 |
Q |
| |
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||| || ||||||||||||||||||||| ||||| ||||| ||||| ||||||| |||| || ||||||||| ||||| |
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| T |
22925079 |
cttggcagtttgataatgatattacttatcaaggacgggataatgtgatgttgtttacttggggaactcataagattgctatg |
22924997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 1786135 - 1786017
Alignment:
| Q |
129 |
gataatgatattacttattggggacgagataacatgatgatgtttacatgggacacacataagatttctatgccttatgttttacactttgataagagcc |
228 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||| ||||| || |||||| ||||||||||| |||| |
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| T |
1786135 |
gataatgatattacttatcagggaggagataatgagatgatgtttacatggggtacacataagattgctatggctcgtgtttttcactttgataaaagcc |
1786036 |
T |
|
| Q |
229 |
caagagaaaagaagactag |
247 |
Q |
| |
|
|||||||||| ||| |||| |
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|
| T |
1786035 |
caagagaaaataagtctag |
1786017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 8966555 - 8966384
Alignment:
| Q |
67 |
gtactctgtgatgttcttaatatgaatgtttttcatattttacttgatagacctt-acaatttgataatgatattacttattggggacgagataacatga |
165 |
Q |
| |
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||||| |||||||||||| ||| ||||||| |||||||||||||| |||| || ||| ||||||||||| || | |||| | ||||| ||| |
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| T |
8966555 |
gtactatgtgatgttcttgatacaaatgtttgtcatattttacttggcagactttgacagtttgataatgacatcagttatcgaggacg--------tga |
8966464 |
T |
|
| Q |
166 |
tgatgtttacatgggacacacataagatttctatgccttatgttttacactttgataagagcccaagagaaaagaagact |
245 |
Q |
| |
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||||||||||||| | ||||||||||||| ||||| || | ||||||||||||||||||||| |||||||||||||||| |
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| T |
8966463 |
tgatgtttacatgtggcacacataagattgctatggctcctattttacactttgataagagcctaagagaaaagaagact |
8966384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 2165314 - 2165414
Alignment:
| Q |
19 |
atcctgcagagttcctatctccatcggcaagcattacaaagaagagaggtactctgtgatgttcttaatatgaatgtttttcatattttacttgatagac |
118 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||| | ||||||| ||||| |||||||||||| |||| |||||| |||||||||||||| ||||| |
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| T |
2165314 |
atcctgcaaagttcctatatccatcggcaaacattatagagaagag--gtactttgtgatgttcttgatattgatgtttgtcatattttacttggtagac |
2165411 |
T |
|
| Q |
119 |
ctt |
121 |
Q |
| |
|
||| |
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|
| T |
2165412 |
ctt |
2165414 |
T |
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