View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_low_20 (Length: 387)
Name: NF8936_low_20
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 2467452 - 2467081
Alignment:
| Q |
1 |
ttaacttcaaatgctacagggcacgatttgcatgtccaacctaacaagacctacaaattgcaaccaccaagaatgtatcaatcaacattatcatnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467452 |
ttaacttcaaatgctacagggcacgatttgcatgtccaacctaacaagacctacaaattgcaaccaccaagaatgtatcaatcaacattatcataaaaaa |
2467353 |
T |
|
| Q |
101 |
ncacaaacaattttttcagcttatgtataaaataacctctaagtcataattcagatacagaaactcaccaccttgtaccacttcagttttgtgcaagcaa |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2467352 |
acacaaacaattttttcagct-atgtataaaataacctctaagtcataattcagatacagaaactcaccacctagtaccacttcagttttgtgcaagcaa |
2467254 |
T |
|
| Q |
201 |
caaaaataaaatgtccttaattgcagaagcaccagaatttcttcaagttttctcagatggaacggtgagacgtttcaacccagaaatagcaccaccctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2467253 |
caaaaataaaatgtccttaattgcagaagcaccagaatttcttcaagttttctcagatggaacggtgaaacgtttcaacccagaaatagcaccaccctca |
2467154 |
T |
|
| Q |
301 |
ttagattcatccaacaaatacaaatccaaagacgtaatcattgaccctacaaaacccatcacaggaagaatct |
373 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2467153 |
ttagattcatccaacaaatacaaatccaaagacataatcattgaccctacaaaacccatcacaggaagaatct |
2467081 |
T |
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