View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_low_24 (Length: 339)
Name: NF8936_low_24
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 38856283 - 38856548
Alignment:
| Q |
11 |
acagaagctcaaccagaagcaaacttcaagtgtctaacaaaaaacgccacgtgtcgtagtttaaccgactacaccagcacaaacgcaacaaccttgaagg |
110 |
Q |
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| T |
38856283 |
acagaagctcaaccagaagcaaacttcaagtgtctaacagaaaacgctacgtgtcgtagtttaaccgactacaccagcacaaactcaacaaccttgaagg |
38856382 |
T |
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| Q |
111 |
aaatagctaccttgttcggtgtaaaacacttcctagacctccttggagctaacaaccttccaagcaacaccaacaacagttacaaagttaatcccaacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38856383 |
aaatagctaccttgttcggtgtaaaacacttcctagacctccttggagctaacaaccttccaagcaacaccaacaacagttacaaagttaatcccaacca |
38856482 |
T |
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| Q |
211 |
agtcatcaaggttccattcccctgcaaatgtagtaacggaacaggtaaatagctacttctcactta |
276 |
Q |
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| T |
38856483 |
agtcatcaaggttccattcccctgcaaatgtagtaacagaacaggtaaataactacttatcactta |
38856548 |
T |
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