View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_low_3 (Length: 582)
Name: NF8936_low_3
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 266 - 560
Target Start/End: Original strand, 20613838 - 20614131
Alignment:
| Q |
266 |
tggcagaggcgcggttgttgcaactactggagtagcggtttgcactagagaagatcataatcgaggaatctatgggatttcatatacatgttattgaact |
365 |
Q |
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| T |
20613838 |
tggcagaggcgcggttgttgcaactattggagtagcagtttgcactagagaagatcataatcgaggaatctatgggatttcatatacacgttattgaact |
20613937 |
T |
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| Q |
366 |
agggtagaattgggattgagatttatattccataacagagagagtgtaagagattattcacaatgctttaaagcttattttttattctctgattgttgaa |
465 |
Q |
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| T |
20613938 |
agggtagaattgggattgagatttatgttccataacagagagagtgtaagagattattcacaa-gctttaaagcttgttttttattttctgatcgttgaa |
20614036 |
T |
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| Q |
466 |
tattacattgaattgagactttaatctgtaaggtatataactaaaactaactttataagtttgttacaaggatattgttatgctacacctatact |
560 |
Q |
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| T |
20614037 |
tattacattgaattgagtttttaatctgtaagctatataactaaaactaactttataagtttgttacaaggatagtgttatgctacacctatact |
20614131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 20613532 - 20613780
Alignment:
| Q |
19 |
caacatacacctccgatcattcaagattcatcaagaatcatatgcatcattctcttgatcattgattagaagaagatggcaagtgcaattgatcaacttg |
118 |
Q |
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| T |
20613532 |
caacatacacctccggtcattcaagattcatcaagaatcatatgcatcattctcttgatcattgattagaagaagatggcaagtgcaattgatcaacttg |
20613631 |
T |
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| Q |
119 |
gaaacagttttagaggaaagatgaaagtctttttggttttcaaacctgtaaattgaggatattattgtctaggcagatacttgacaacatatggaaaaca |
218 |
Q |
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| T |
20613632 |
gaaacagttttagaggaaagatgaaagtctttttggttttcaaacctgtaaattgaggatattattgtcttggcagatacttgacaacatttggaaaaga |
20613731 |
T |
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| Q |
219 |
aaatacttacaattcctacttgatcataatcaaggcagaagtagagatg |
267 |
Q |
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| T |
20613732 |
aaatacttaccattcctacttgatcataatcaaggcagaagtagagatg |
20613780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 30117178 - 30117265
Alignment:
| Q |
48 |
atcaagaatcatatgcatcattctcttgatcattgattagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaag |
138 |
Q |
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| T |
30117178 |
atcaagaatcatttgcatccctcacttgctcattgattagaagatga---caagtactatggatcaacttggaaacagttttggaggaaag |
30117265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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