View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8936_low_36 (Length: 231)

Name: NF8936_low_36
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8936_low_36
NF8936_low_36
[»] chr6 (2 HSPs)
chr6 (18-220)||(32831088-32831287)
chr6 (76-123)||(23107715-23107762)
[»] chr5 (1 HSPs)
chr5 (59-122)||(43177076-43177139)
[»] chr7 (5 HSPs)
chr7 (18-124)||(21562687-21562793)
chr7 (22-125)||(37519126-37519229)
chr7 (56-129)||(3100634-3100707)
chr7 (57-119)||(34868066-34868128)
chr7 (76-129)||(22244665-22244718)
[»] chr2 (1 HSPs)
chr2 (17-124)||(31275066-31275173)
[»] scaffold0024 (1 HSPs)
scaffold0024 (69-129)||(121019-121078)
[»] chr3 (4 HSPs)
chr3 (65-124)||(940527-940586)
chr3 (76-125)||(14753751-14753800)
chr3 (76-123)||(41301818-41301865)
chr3 (69-122)||(34919829-34919882)
[»] chr1 (3 HSPs)
chr1 (34-124)||(20805807-20805897)
chr1 (23-122)||(18507623-18507721)
chr1 (76-124)||(18041621-18041669)
[»] chr8 (3 HSPs)
chr8 (76-121)||(28235978-28236023)
chr8 (56-124)||(40784319-40784387)
chr8 (76-129)||(10649227-10649280)
[»] chr4 (2 HSPs)
chr4 (76-124)||(9157352-9157400)
chr4 (76-124)||(31816352-31816400)
[»] scaffold0596 (1 HSPs)
scaffold0596 (65-121)||(5031-5086)
[»] scaffold0044 (1 HSPs)
scaffold0044 (84-120)||(58747-58783)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 32831287 - 32831088
Alignment:
Q  18 cctcctaagggggccgcctcagaaggattccaaaagtgcctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatac 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32831287 cctcctaagggggccgcctcagaaggattccagaagtgcctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatac 32831188  T
Q  118 aagcccataaaacaaaggaactggagctgctttgtggtccgaaacttaggcacaattggataaactgtgttaccaccaaatatcatgtgtttttctgtct 217  Q
    ||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  32831187 aagcccataaaacaaaggaactgcagctgctttgtg---cgaaacttaggcacaattggataaactgtgttatcaccaaatatcatgtgtttttctgttt 32831091  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 23107715 - 23107762
Alignment:
Q  76 acttagggcccaagttgcttggggcctaagtcacggaaatacaagccc 123  Q
    |||||||||||||| || ||||||| |||||||| |||||||||||||    
T  23107715 acttagggcccaagctgtttggggcgtaagtcaccgaaatacaagccc 23107762  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 43177139 - 43177076
Alignment:
Q  59 agaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagcc 122  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43177139 agaacgctctaaacctaacttagggcccaagttgcttggggcctaagtcacggaaatacaagcc 43177076  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 21562687 - 21562793
Alignment:
Q  18 cctcctaagggggccgcctcagaaggattccaaaagtgcctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatac 117  Q
    |||||||| || | |||||||||||| ||| | |||   |||| ||||||||||| | ||||| ||||||||||  ||||||||||||||||||||||||    
T  21562687 cctcctaatggcgtcgcctcagaaggcttctagaagcatctagtacactctaaacatgacttaaggcccaagttatttggggcctaagtcacggaaatac 21562786  T
Q  118 aagccca 124  Q
    |||||||    
T  21562787 aagccca 21562793  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 37519229 - 37519126
Alignment:
Q  22 ctaagggggccgcctcagaaggattccaaaagtgcctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagc 121  Q
    ||||||| |||||||||||||| ||| | ||  | |||||||||||  ||| ||||||||||  ||||||| |||| ||||||||||| |||||||||||    
T  37519229 ctaagggcgccgcctcagaaggcttctagaaacgtctagaacactccgaacataacttagggtacaagttgtttggagcctaagtcacagaaatacaagc 37519130  T
Q  122 ccat 125  Q
    ||||    
T  37519129 ccat 37519126  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 3100707 - 3100634
Alignment:
Q  56 cctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagcccataaaa 129  Q
    |||||||| |||| ||||| |||||||||||||||| |||||||||||||||| |||||  |||||||| ||||    
T  3100707 cctagaacgctctgaacgtgacttagggcccaagttacttggggcctaagtcatggaaaaccaagcccaaaaaa 3100634  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 34868128 - 34868066
Alignment:
Q  57 ctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaa 119  Q
    |||||||||||||||| | || |||||||||||||| |||||||||||||||| |||| ||||    
T  34868128 ctagaacactctaaacttgacgtagggcccaagttgtttggggcctaagtcacagaaagacaa 34868066  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 22244718 - 22244665
Alignment:
Q  76 acttagggcccaagttgcttggggcctaagtcacggaaatacaagcccataaaa 129  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||    
T  22244718 acttagggcctaagttacttagggcctaagtcacggaaatacaagcccaaaaaa 22244665  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 31275173 - 31275066
Alignment:
Q  17 acctcctaagggggccgcctcagaaggattccaaaagtgcctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaata 116  Q
    |||||||||||| |||||||||  | | ||  | ||||||||| || ||||||||||| ||||||||||||||||| |  |||| ||||||| |||||||    
T  31275173 acctcctaagggcgccgcctcaacaagcttttagaagtgcctaaaatactctaaacgtgacttagggcccaagttgttgtgggcttaagtcaaggaaata 31275074  T
Q  117 caagccca 124  Q
    ||||||||    
T  31275073 caagccca 31275066  T

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Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 121019 - 121078
Alignment:
Q  69 aaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagcccataaaa 129  Q
    |||| |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  121019 aaacataacttagggcccacgttgattggggcctaagtcac-gaaatacaagcccataaaa 121078  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 940527 - 940586
Alignment:
Q  65 ctctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagccca 124  Q
    |||||||| | |||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  940527 ctctaaacatgacttagggcccaagttgcttaggggctaagtcacggaaaaacaagccca 940586  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 14753751 - 14753800
Alignment:
Q  76 acttagggcccaagttgcttggggcctaagtcacggaaatacaagcccat 125  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  14753751 acttaaggcccaaattgcttggggcttaagtcacggaaatacaagcccat 14753800  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 41301865 - 41301818
Alignment:
Q  76 acttagggcccaagttgcttggggcctaagtcacggaaatacaagccc 123  Q
    ||||||||| |||||| |||||||| |||||||| |||||||||||||    
T  41301865 acttagggctcaagttacttggggcttaagtcacagaaatacaagccc 41301818  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 34919882 - 34919829
Alignment:
Q  69 aaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagcc 122  Q
    |||||| ||||| |||| ||||| ||||||| |||||||||| |||||||||||    
T  34919882 aaacgtgacttatggcctaagttacttggggtctaagtcacgaaaatacaagcc 34919829  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 20805897 - 20805807
Alignment:
Q  34 cctcagaaggattccaaaagtgcctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagccca 124  Q
    |||||||||| ||| | |||  |||||||| ||||||| || |||||||||||||||| | |||| |||||||||| |||| |||||||||    
T  20805897 cctcagaaggcttctagaagcacctagaacgctctaaatgtgacttagggcccaagttacatgggccctaagtcactgaaagacaagccca 20805807  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 18507721 - 18507623
Alignment:
Q  23 taagggggccgcctcagaaggattccaaaagtgcctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagcc 122  Q
    |||||| |||||||||  ||| ||| | |||  |||||||| ||| ||| || |||||||||||||||| ||| |||| |||||||||||||||||||||    
T  18507721 taagggtgccgcctcaataggcttctagaagcacctagaacgctcaaaa-gtgacttagggcccaagttactttgggcttaagtcacggaaatacaagcc 18507623  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 18041621 - 18041669
Alignment:
Q  76 acttagggcccaagttgcttggggcctaagtcacggaaatacaagccca 124  Q
    |||||||||||||| |||||| ||| |||||||| |||||| |||||||    
T  18041621 acttagggcccaagctgcttgaggcttaagtcaccgaaatagaagccca 18041669  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 28235978 - 28236023
Alignment:
Q  76 acttagggcccaagttgcttggggcctaagtcacggaaatacaagc 121  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||    
T  28235978 acttagagtccaagttgcttggggtctaagtcacggaaatacaagc 28236023  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 40784319 - 40784387
Alignment:
Q  56 cctagaacactctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagccca 124  Q
    |||||||| |||||||| | || ||||||||||||| |||| ||||||||||||| |||  ||||||||    
T  40784319 cctagaacgctctaaacatgacatagggcccaagttacttgaggcctaagtcacgcaaaatcaagccca 40784387  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 10649227 - 10649280
Alignment:
Q  76 acttagggcccaagttgcttggggcctaagtcacggaaatacaagcccataaaa 129  Q
    ||||||| |||||| |||||||||| |||||||| ||  |||||||||||||||    
T  10649227 acttaggacccaagctgcttggggcttaagtcaccgagttacaagcccataaaa 10649280  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 9157400 - 9157352
Alignment:
Q  76 acttagggcccaagttgcttggggcctaagtcacggaaatacaagccca 124  Q
    |||||||||||||| |||||||||  |||||||| ||||||||||||||    
T  9157400 acttagggcccaagctgcttggggtttaagtcaccgaaatacaagccca 9157352  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 31816352 - 31816400
Alignment:
Q  76 acttagggcccaagttgcttggggcctaagtcacggaaatacaagccca 124  Q
    |||||||||||||| |||||||||| |||||||| ||| ||||||||||    
T  31816352 acttagggcccaagctgcttggggcttaagtcaccgaattacaagccca 31816400  T

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Target: scaffold0596 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 5031 - 5086
Alignment:
Q  65 ctctaaacgtaacttagggcccaagttgcttggggcctaagtcacggaaatacaagc 121  Q
    |||||||| | ||||||||| |||||||||||||| | |||||||||||| ||||||    
T  5031 ctctaaacatgacttagggctcaagttgcttggggtc-aagtcacggaaaaacaagc 5086  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 58747 - 58783
Alignment:
Q  84 cccaagttgcttggggcctaagtcacggaaatacaag 120  Q
    |||||||| |||||||||||||||||| |||||||||    
T  58747 cccaagttacttggggcctaagtcacgaaaatacaag 58783  T

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