View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8936_low_39 (Length: 221)
Name: NF8936_low_39
Description: NF8936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8936_low_39 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33309989 - 33310209
Alignment:
| Q |
1 |
cacttgtagattgtgagaatcattcttccattgtattaactgcagtatatagtacaactaaattacccttttgcatattaatgctaataaagtgtaaaat |
100 |
Q |
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| T |
33309989 |
cacttgtagattgtgagaatcattcttccattgtattaactgcagtatatagtacaactaaattacccttttgcatattaatgctaataaagtgtaaaat |
33310088 |
T |
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| Q |
101 |
tgaacatttcaccaaaatagtatgcaaaactgtttgctacctttggtggaccacgaacatcacttgtgtaatatagcctagcactgtcaacaagttcgca |
200 |
Q |
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| T |
33310089 |
tgaacatttcaccaaaatagtatgcaaaactgtttgctacctttggtggaccacgaacatcacttgtgtaatatagcctagcactgtcaacaagttcgca |
33310188 |
T |
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| Q |
201 |
atattttggaaatgcattagc |
221 |
Q |
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| T |
33310189 |
atattttggaaatgcattagc |
33310209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 33250219 - 33250302
Alignment:
| Q |
138 |
tacctttggtggaccacgaacatcacttgtgtaatatagcctagcactgtcaacaagttcgcaatattttggaaatgcattagc |
221 |
Q |
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| T |
33250219 |
tacctttggtggaccaccaacagcatctgtgcaatagagcctagcactgtcaacaagtttgcagtattttggaaatgcattagc |
33250302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 33270391 - 33270474
Alignment:
| Q |
138 |
tacctttggtggaccacgaacatcacttgtgtaatatagcctagcactgtcaacaagttcgcaatattttggaaatgcattagc |
221 |
Q |
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| T |
33270391 |
tacctttggtggaccaccaacagcatctgtgcaatagagcctagcactgtcaacaagtttgcagtattttggaaatgcattagc |
33270474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 33301823 - 33301906
Alignment:
| Q |
138 |
tacctttggtggaccacgaacatcacttgtgtaatatagcctagcactgtcaacaagttcgcaatattttggaaatgcattagc |
221 |
Q |
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|||||||||||| | | ||||||| ||||| |||| || || ||| | |||||||||| ||||||| |||||||||||||||| |
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| T |
33301823 |
tacctttggtgggaccccaacatcatttgtgcaatagagtctggcattatcaacaagtttgcaatatcttggaaatgcattagc |
33301906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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